Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQC entry

There is 1 chain in PDB entry 5JQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 244PHE 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
288 291Right-handed 310
Helix 2
AA2
A
346 350Right-handed 310
Helix 3
AA3
A
369 373Right-handed 310
Helix 4
AA4
A
442 446Right-handed 310
Helix 5
AA5
A
453 456Right-handed 310
Helix 6
AA6
A
489 491Right-handed 310
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There are 6 sheets in PDB entry 5JQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 322first strand
Strand 2
A
306 313anti-parallel
Strand 3
A
294 303anti-parallel
Strand 4
A
251 261anti-parallel
Strand 5
A
326 328anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
285 286anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 404first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
376 385anti-parallel
Strand 4
A
333 344anti-parallel
Strand 5
A
408 410anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
364 366anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 426first strand
Strand 2
A
458 468anti-parallel
Strand 3
A
471 478anti-parallel
Strand 4
A
481 487anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
450 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il