Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQE entry

There is 1 chain in PDB entry 5JQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18SER 1182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5JQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
54 64Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
100 101Right-handed 310
Helix 6
AA6
A
102 107Right-handed 310
Helix 7
AA7
A
142 152Right-handed alpha
Helix 8
AA8
A
153 155Right-handed 310
Helix 9
AA9
A
165 176Right-handed alpha
Helix 10
AB1
A
197 213Right-handed alpha
Helix 11
AB2
A
221 231Right-handed alpha
Helix 12
AB3
A
240 242Right-handed 310
Helix 13
AB4
A
243 249Right-handed alpha
Helix 14
AB5
A
284 294Right-handed alpha
Helix 15
AB6
A
298 309Right-handed alpha
Helix 16
AB7
A
316 325Right-handed alpha
Helix 17
AB8
A
328 338Right-handed alpha
Helix 18
AB9
A
345 347Right-handed 310
Helix 19
AC1
A
348 364Right-handed alpha
Helix 20
AC2
A
368 1012Right-handed alpha
Helix 21
AC3
A
1015 1026Right-handed alpha
Helix 22
AC4
A
1027 1029Right-handed 310
Helix 23
AC5
A
1032 1036Right-handed 310
Helix 24
AC6
A
1040 1051Right-handed alpha
Helix 25
AC7
A
1059 1069Right-handed alpha
Helix 26
AC8
A
1071 1080Right-handed alpha
Helix 27
AC9
A
1082 1091Right-handed alpha
Helix 28
AD1
A
1099 1111Right-handed alpha
Helix 29
AD2
A
1113 1123Right-handed alpha
Helix 30
AD3
A
1138 1148Right-handed alpha
Helix 31
AD4
A
1157 1166Right-handed alpha
Helix 32
AD5
A
1169 1180Right-handed alpha
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There are 6 sheets in PDB entry 5JQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
19 22parallel
Strand 3
A
71 75parallel
Strand 4
A
270 278anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
313 314anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
19 22parallel
Strand 3
A
71 75parallel
Strand 4
A
270 278anti-parallel
Strand 5
A
340 341parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
114 115anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
234 239parallel
Strand 3
A
126 130anti-parallel
Strand 4
A
254 257anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
187 189anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
265 266anti-parallel
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