Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQH entry

There are 4 chains in PDB entry 5JQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 867ARG 1343
B
 GLY 866ARG 1344
D
 GLN 1VAL 117
C
 GLN 1HIS 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5JQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
868 874Right-handed alpha
Helix 2
AA2
A
933 946Right-handed alpha
Helix 3
AA3
A
949 954Right-handed alpha
Helix 4
AA4
A
957 971Right-handed alpha
Helix 5
AA5
A
972 978Right-handed alpha
Helix 6
AA6
A
979 988Right-handed alpha
Helix 7
AA7
A
990 998Right-handed alpha
Helix 8
AA8
A
1001 1007Right-handed alpha
Helix 9
AA9
A
1007 1021Right-handed alpha
Helix 10
AB1
A
1023 1061Right-handed alpha
Helix 11
AB2
A
1062 1065Right-handed 310
Helix 12
AB3
A
1066 1086Right-handed alpha
Helix 13
AB4
A
1086 1096Right-handed alpha
Helix 14
AB5
A
1101 1136Right-handed alpha
Helix 15
AB6
A
1146 1164Right-handed alpha
Helix 16
AB7
A
1165 1171Right-handed alpha
Helix 17
AB8
A
1178 1187Right-handed alpha
Helix 18
AB9
A
1196 1208Right-handed alpha
Helix 19
AC1
A
1208 1230Right-handed alpha
Helix 20
AC2
A
1263 1299Right-handed alpha
Helix 21
AC3
A
1304 1318Right-handed alpha
Helix 22
AC4
A
1321 1326Right-handed alpha
Helix 23
AC5
A
1329 1340Right-handed alpha
Helix 24
AC6
B
868 874Right-handed alpha
Helix 25
AC7
B
924 931Right-handed alpha
Helix 26
AC8
B
931 946Right-handed alpha
Helix 27
AC9
B
949 954Right-handed alpha
Helix 28
AD1
B
957 971Right-handed alpha
Helix 29
AD2
B
974 979Right-handed alpha
Helix 30
AD3
B
979 988Right-handed alpha
Helix 31
AD4
B
990 998Right-handed alpha
Helix 32
AD5
B
1001 1007Right-handed alpha
Helix 33
AD6
B
1007 1021Right-handed alpha
Helix 34
AD7
B
1023 1061Right-handed alpha
Helix 35
AD8
B
1062 1065Right-handed 310
Helix 36
AD9
B
1066 1086Right-handed alpha
Helix 37
AE1
B
1086 1096Right-handed alpha
Helix 38
AE2
B
1101 1136Right-handed alpha
Helix 39
AE3
B
1146 1164Right-handed alpha
Helix 40
AE4
B
1165 1171Right-handed alpha
Helix 41
AE5
B
1178 1187Right-handed alpha
Helix 42
AE6
B
1196 1208Right-handed alpha
Helix 43
AE7
B
1208 1229Right-handed alpha
Helix 44
AE8
B
1262 1299Right-handed alpha
Helix 45
AE9
B
1304 1319Right-handed alpha
Helix 46
AF1
B
1321 1327Right-handed alpha
Helix 47
AF2
B
1329 1340Right-handed alpha
Helix 48
AF3
D
86 90Right-handed 310
Helix 49
AF4
C
86 90Right-handed 310
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There are 6 sheets in PDB entry 5JQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
77 83anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
113 116parallel
Strand 3
D
91 100anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
113 116parallel
Strand 3
D
91 100anti-parallel
Strand 4
D
105 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
77 83anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
113 118parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
57 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
113 118parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
105 109anti-parallel
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