Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JQK entry

There are 2 chains in PDB entry 5JQK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 129	HIS 775
B	ASN 130	ILE 774

There are 51 helices in PDB entry 5JQK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	146	Right-handed alpha
Helix 2	AA2	A	165	169	Right-handed 310
Helix 3	AA3	A	170	176	Right-handed alpha
Helix 4	AA4	A	199	207	Right-handed alpha
Helix 5	AA5	A	223	231	Right-handed alpha
Helix 6	AA6	A	245	260	Right-handed alpha
Helix 7	AA7	A	313	318	Right-handed alpha
Helix 8	AA8	A	320	335	Right-handed alpha
Helix 9	AA9	A	346	355	Right-handed alpha
Helix 10	AB1	A	391	394	Right-handed 310
Helix 11	AB2	A	397	405	Right-handed alpha
Helix 12	AB3	A	414	422	Right-handed alpha
Helix 13	AB4	A	423	427	Right-handed 310
Helix 14	AB5	A	449	454	Right-handed alpha
Helix 15	AB6	A	455	456	Right-handed 310
Helix 16	AB7	A	457	459	Right-handed 310
Helix 17	AB8	A	466	474	Right-handed alpha
Helix 18	AB9	A	476	507	Right-handed alpha
Helix 19	AC1	A	508	513	Right-handed 310
Helix 20	AC2	A	514	528	Right-handed alpha
Helix 21	AC3	A	545	549	Right-handed 310
Helix 22	AC4	A	592	612	Right-handed alpha
Helix 23	AC5	A	619	633	Right-handed alpha
Helix 24	AC6	A	718	722	Right-handed 310
Helix 25	AC7	A	728	752	Right-handed alpha
Helix 26	AC8	A	758	769	Right-handed alpha
Helix 27	AC9	B	131	145	Right-handed alpha
Helix 28	AD1	B	165	169	Right-handed 310
Helix 29	AD2	B	170	176	Right-handed alpha
Helix 30	AD3	B	199	207	Right-handed alpha
Helix 31	AD4	B	223	229	Right-handed alpha
Helix 32	AD5	B	245	259	Right-handed alpha
Helix 33	AD6	B	313	318	Right-handed alpha
Helix 34	AD7	B	320	335	Right-handed alpha
Helix 35	AD8	B	346	355	Right-handed alpha
Helix 36	AD9	B	391	394	Right-handed 310
Helix 37	AE1	B	397	405	Right-handed alpha
Helix 38	AE2	B	414	422	Right-handed alpha
Helix 39	AE3	B	449	454	Right-handed alpha
Helix 40	AE4	B	455	456	Right-handed 310
Helix 41	AE5	B	457	459	Right-handed 310
Helix 42	AE6	B	467	474	Right-handed alpha
Helix 43	AE7	B	476	507	Right-handed alpha
Helix 44	AE8	B	508	513	Right-handed 310
Helix 45	AE9	B	514	528	Right-handed alpha
Helix 46	AF1	B	545	549	Right-handed 310
Helix 47	AF2	B	592	612	Right-handed alpha
Helix 48	AF3	B	619	633	Right-handed alpha
Helix 49	AF4	B	718	722	Right-handed 310
Helix 50	AF5	B	728	752	Right-handed alpha
Helix 51	AF6	B	758	769	Right-handed alpha

There are 17 sheets in PDB entry 5JQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	192	196	parallel
Strand 3	A	183	186	anti-parallel
Strand 4	A	150	154	anti-parallel
Strand 5	A	236	240	parallel
Strand 6	A	287	292	parallel
Strand 7	A	265	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	356	357	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	344	first strand
Strand 2	A	369	376	anti-parallel
Strand 3	A	381	389	anti-parallel
Strand 4	A	408	411	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	461	463	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	535	first strand
Strand 2	A	573	575	anti-parallel
Strand 3	A	578	579	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	566	571	anti-parallel
Strand 3	A	582	587	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	705	711	anti-parallel
Strand 3	A	691	700	anti-parallel
Strand 4	A	672	675	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	645	first strand
Strand 2	A	654	659	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	685	688	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	192	196	parallel
Strand 3	B	183	186	anti-parallel
Strand 4	B	151	154	anti-parallel
Strand 5	B	238	240	parallel
Strand 6	B	290	292	parallel
Strand 7	B	268	270	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	356	357	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	411	first strand
Strand 2	B	381	389	parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	341	344	anti-parallel
Strand 5	B	442	444	parallel
Strand 6	B	461	463	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	535	first strand
Strand 2	B	573	575	anti-parallel
Strand 3	B	578	579	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	566	571	anti-parallel
Strand 3	B	582	587	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	705	711	anti-parallel
Strand 3	B	691	700	anti-parallel
Strand 4	B	672	675	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	645	first strand
Strand 2	B	654	659	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	681	first strand
Strand 2	B	685	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JQK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQK