Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQL entry

There are 12 chains in PDB entry 5JQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0ALA 170
B
 ILE 4PHE 75
C
 PRO 0ALA 170
D
 ILE 4ASN 77
E
 MET 1GLU 168
F
 ILE 4PHE 75
G
 PRO 0GLU 168
H
 MSE 5ASN 77
I
 PRO 0GLN 165
J
 MET 5PHE 75
K
 PRO 0GLU 168
L
 MET 5PHE 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5JQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
132 167Right-handed alpha
Helix 3
AA3
B
10 12Right-handed 310
Helix 4
AA4
B
13 31Right-handed alpha
Helix 5
AA5
B
42 60Right-handed alpha
Helix 6
AA6
B
62 72Right-handed alpha
Helix 7
AA7
C
14 24Right-handed alpha
Helix 8
AA8
C
133 169Right-handed alpha
Helix 9
AA9
D
10 12Right-handed 310
Helix 10
AB1
D
13 31Right-handed alpha
Helix 11
AB2
D
42 60Right-handed alpha
Helix 12
AB3
D
62 71Right-handed alpha
Helix 13
AB4
E
14 24Right-handed alpha
Helix 14
AB5
E
132 168Right-handed alpha
Helix 15
AB6
F
10 31Right-handed alpha
Helix 16
AB7
F
42 60Right-handed alpha
Helix 17
AB8
F
62 71Right-handed alpha
Helix 18
AB9
G
14 24Right-handed alpha
Helix 19
AC1
G
132 167Right-handed alpha
Helix 20
AC2
H
10 12Right-handed 310
Helix 21
AC3
H
13 31Right-handed alpha
Helix 22
AC4
H
42 60Right-handed alpha
Helix 23
AC5
H
62 72Right-handed alpha
Helix 24
AC6
I
14 24Right-handed alpha
Helix 25
AC7
I
63 67Right-handed 310
Helix 26
AC8
I
132 165Right-handed alpha
Helix 27
AC9
J
10 12Right-handed 310
Helix 28
AD1
J
13 31Right-handed alpha
Helix 29
AD2
J
42 60Right-handed alpha
Helix 30
AD3
J
62 72Right-handed alpha
Helix 31
AD4
K
14 24Right-handed alpha
Helix 32
AD5
K
137 167Right-handed alpha
Helix 33
AD6
L
10 12Right-handed 310
Helix 34
AD7
L
13 31Right-handed alpha
Helix 35
AD8
L
42 59Right-handed alpha
Helix 36
AD9
L
62 71Right-handed alpha
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There are 6 sheets in PDB entry 5JQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 11first strand
Strand 2
A
120 131anti-parallel
Strand 3
A
104 115anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
73 85anti-parallel
Strand 6
A
50 61anti-parallel
Strand 7
A
34 44anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 11first strand
Strand 2
C
120 130anti-parallel
Strand 3
C
105 115anti-parallel
Strand 4
C
90 97anti-parallel
Strand 5
C
73 85anti-parallel
Strand 6
C
50 61anti-parallel
Strand 7
C
34 44anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 11first strand
Strand 2
E
120 131anti-parallel
Strand 3
E
104 115anti-parallel
Strand 4
E
90 97anti-parallel
Strand 5
E
73 85anti-parallel
Strand 6
E
50 61anti-parallel
Strand 7
E
34 44anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1 11first strand
Strand 2
G
120 131anti-parallel
Strand 3
G
104 115anti-parallel
Strand 4
G
90 97anti-parallel
Strand 5
G
73 85anti-parallel
Strand 6
G
50 61anti-parallel
Strand 7
G
34 44anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
1 11first strand
Strand 2
I
121 131anti-parallel
Strand 3
I
104 113anti-parallel
Strand 4
I
90 97anti-parallel
Strand 5
I
75 85anti-parallel
Strand 6
I
50 59anti-parallel
Strand 7
I
34 44anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 11first strand
Strand 2
K
120 129anti-parallel
Strand 3
K
106 115anti-parallel
Strand 4
K
90 97anti-parallel
Strand 5
K
73 85anti-parallel
Strand 6
K
50 61anti-parallel
Strand 7
K
34 44anti-parallel
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