Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQM entry

There are 3 chains in PDB entry 5JQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 258
B
 MET 1GLU 259
C
 MET 1PHE 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5JQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
116 119Right-handed 310
Helix 4
AA4
A
137 169Right-handed alpha
Helix 5
AA5
A
193 195Right-handed 310
Helix 6
AA6
A
196 214Right-handed alpha
Helix 7
AA7
A
226 242Right-handed alpha
Helix 8
AA8
A
245 255Right-handed alpha
Helix 9
AA9
B
14 24Right-handed alpha
Helix 10
AB1
B
67 71Right-handed 310
Helix 11
AB2
B
137 168Right-handed alpha
Helix 12
AB3
B
193 195Right-handed 310
Helix 13
AB4
B
196 214Right-handed alpha
Helix 14
AB5
B
225 242Right-handed alpha
Helix 15
AB6
B
245 254Right-handed alpha
Helix 16
AB7
C
14 24Right-handed alpha
Helix 17
AB8
C
67 71Right-handed 310
Helix 18
AB9
C
138 169Right-handed alpha
Helix 19
AC1
C
193 195Right-handed 310
Helix 20
AC2
C
196 214Right-handed alpha
Helix 21
AC3
C
225 242Right-handed alpha
Helix 22
AC4
C
245 255Right-handed alpha
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There are 3 sheets in PDB entry 5JQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 11first strand
Strand 2
A
120 131anti-parallel
Strand 3
A
104 115anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
73 85anti-parallel
Strand 6
A
50 61anti-parallel
Strand 7
A
34 44anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 11first strand
Strand 2
B
120 131anti-parallel
Strand 3
B
104 115anti-parallel
Strand 4
B
90 97anti-parallel
Strand 5
B
73 85anti-parallel
Strand 6
B
50 61anti-parallel
Strand 7
B
34 44anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 11first strand
Strand 2
C
120 130anti-parallel
Strand 3
C
105 115anti-parallel
Strand 4
C
90 97anti-parallel
Strand 5
C
73 85anti-parallel
Strand 6
C
50 61anti-parallel
Strand 7
C
34 44anti-parallel
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