Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQN entry

There are 2 chains in PDB entry 5JQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 144
A
 TYR 146LEU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5JQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 32Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
57 76Right-handed alpha
Helix 5
AA5
A
115 123Right-handed alpha
Helix 6
AA6
A
144 149Right-handed 310
Helix 7
AA7
A
150 160Right-handed alpha
Helix 8
AA8
A
176 181Right-handed alpha
Helix 9
AA9
A
181 191Right-handed alpha
Helix 10
AB1
A
249 254Right-handed alpha
Helix 11
AB2
A
255 263Right-handed alpha
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There are 3 sheets in PDB entry 5JQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
36 38parallel
Strand 5
A
1 7parallel
Strand 6
A
230 236anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
164 168parallel
Strand 4
A
193 197parallel
Strand 5
A
213 215anti-parallel
Strand 6
A
221 224anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
206 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il