Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQP entry

There are 2 chains in PDB entry 5JQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 34GLY 977
B
 LEU 24ILE 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5JQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 41Right-handed 310
Helix 2
AA2
A
42 57Right-handed alpha
Helix 3
AA3
A
69 72Right-handed 310
Helix 4
AA4
A
114 119Right-handed alpha
Helix 5
AA5
A
137 143Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
385 398Right-handed alpha
Helix 8
AA8
A
404 409Right-handed 310
Helix 9
AA9
A
419 433Right-handed alpha
Helix 10
AB1
A
443 447Right-handed 310
Helix 11
AB2
A
462 472Right-handed alpha
Helix 12
AB3
A
491 500Right-handed alpha
Helix 13
AB4
A
528 539Right-handed alpha
Helix 14
AB5
A
565 569Right-handed 310
Helix 15
AB6
A
582 586Right-handed alpha
Helix 16
AB7
A
588 602Right-handed alpha
Helix 17
AB8
A
622 626Right-handed 310
Helix 18
AB9
A
637 654Right-handed alpha
Helix 19
AC1
A
671 683Right-handed alpha
Helix 20
AC2
A
700 705Right-handed 310
Helix 21
AC3
A
707 722Right-handed alpha
Helix 22
AC4
A
722 737Right-handed alpha
Helix 23
AC5
A
743 748Right-handed alpha
Helix 24
AC6
A
751 755Right-handed 310
Helix 25
AC7
A
836 841Right-handed 310
Helix 26
AC8
A
869 874Right-handed 310
Helix 27
AC9
A
904 911Right-handed alpha
Helix 28
AD1
A
924 928Right-handed 310
Helix 29
AD2
B
29 36Right-handed 310
Helix 30
AD3
B
55 57Right-handed 310
Helix 31
AD4
B
118 122Right-handed 310
Helix 32
AD5
B
135 139Right-handed 310
Helix 33
AD6
B
141 145Right-handed 310
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There are 13 sheets in PDB entry 5JQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
73 75anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
93 102anti-parallel
Strand 4
A
108 112anti-parallel
Strand 5
A
376 381anti-parallel
Strand 6
A
329 335anti-parallel
Strand 7
A
321 326anti-parallel
Strand 8
A
270 273anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
173 178anti-parallel
Strand 4
A
183 188anti-parallel
Strand 5
A
191 196anti-parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
203 204anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
173 178anti-parallel
Strand 4
A
183 188anti-parallel
Strand 5
A
191 196anti-parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
363 371anti-parallel
Strand 8
A
341 349anti-parallel
Strand 9
A
297 299anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
248 250anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 660first strand
Strand 2
A
628 630parallel
Strand 3
A
614 616parallel
Strand 4
A
551 555parallel
Strand 5
A
476 480parallel
Strand 6
A
439 442parallel
Strand 7
A
411 412parallel
Strand 8
A
689 690parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
519 523anti-parallel
Strand 3
A
514 516anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
580 581anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
741 742first strand
Strand 2
A
761 763anti-parallel
Strand 3
A
768 770anti-parallel
Strand 4
A
819 822anti-parallel
Strand 5
A
791 793anti-parallel
Strand 6
A
799 800anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 785first strand
Strand 2
A
806 811anti-parallel
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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 829first strand
Strand 2
A
845 850anti-parallel
Strand 3
A
914 921parallel
Strand 4
A
958 967anti-parallel
Strand 5
A
940 949anti-parallel
Strand 6
A
932 937anti-parallel
Strand 7
A
972 975anti-parallel
Strand 8
A
887 892anti-parallel
Strand 9
A
877 884anti-parallel
Strand 10
A
857 863anti-parallel
Strand 11
A
825 829parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
51 53anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
115 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il