Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQS entry

There are 2 chains in PDB entry 5JQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 111SER 367
D
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5JQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 149Right-handed alpha
Helix 2
AA2
A
163 175Right-handed alpha
Helix 3
AA3
A
188 207Right-handed alpha
Helix 4
AA4
A
223 232Right-handed alpha
Helix 5
AA5
A
246 254Right-handed alpha
Helix 6
AA6
A
257 271Right-handed alpha
Helix 7
AA7
A
273 290Right-handed alpha
Helix 8
AA8
A
295 306Right-handed alpha
Helix 9
AA9
A
336 340Right-handed 310
Helix 10
AB1
D
22 35Right-handed alpha
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There are 4 sheets in PDB entry 5JQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
113 121anti-parallel
Strand 3
A
160 162anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
D
73 75anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
311 316parallel
Strand 3
A
319 326anti-parallel
Strand 4
A
329 333anti-parallel
Strand 5
A
347 349anti-parallel
Strand 6
A
359 360anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 69parallel
Strand 4
D
43 45anti-parallel
Strand 5
D
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il