Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JQU entry

There are 8 chains in PDB entry 5JQU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	LEU 455
B	LYS 3	LEU 455
C	THR 1	LEU 455
D	THR 1	LEU 455
E	ILE 2	LEU 455
F	THR 1	GLY 456
G	ILE 2	LEU 455
H	ILE 2	LEU 455

There are195 helices in PDB entry 5JQU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	16	21	Right-handed 310
Helix 3	AA3	A	24	37	Right-handed alpha
Helix 4	AA4	A	54	62	Right-handed alpha
Helix 5	AA5	A	72	83	Right-handed alpha
Helix 6	AA6	A	85	89	Right-handed 310
Helix 7	AA7	A	95	108	Right-handed alpha
Helix 8	AA8	A	108	132	Right-handed alpha
Helix 9	AA9	A	141	159	Right-handed alpha
Helix 10	AB1	A	163	167	Right-handed 310
Helix 11	AB2	A	171	188	Right-handed alpha
Helix 12	AB3	A	195	197	Right-handed 310
Helix 13	AB4	A	198	225	Right-handed alpha
Helix 14	AB5	A	232	240	Right-handed alpha
Helix 15	AB6	A	250	283	Right-handed alpha
Helix 16	AB7	A	283	298	Right-handed alpha
Helix 17	AB8	A	304	310	Right-handed alpha
Helix 18	AB9	A	312	325	Right-handed alpha
Helix 19	AC1	A	357	361	Right-handed alpha
Helix 20	AC2	A	363	368	Right-handed alpha
Helix 21	AC3	A	375	380	Right-handed 310
Helix 22	AC4	A	381	385	Right-handed 310
Helix 23	AC5	A	395	399	Right-handed 310
Helix 24	AC6	A	402	420	Right-handed alpha
Helix 25	AC7	B	11	15	Right-handed 310
Helix 26	AC8	B	16	21	Right-handed 310
Helix 27	AC9	B	24	37	Right-handed alpha
Helix 28	AD1	B	54	62	Right-handed alpha
Helix 29	AD2	B	72	83	Right-handed alpha
Helix 30	AD3	B	85	89	Right-handed 310
Helix 31	AD4	B	93	104	Right-handed alpha
Helix 32	AD5	B	105	107	Right-handed 310
Helix 33	AD6	B	108	132	Right-handed alpha
Helix 34	AD7	B	141	159	Right-handed alpha
Helix 35	AD8	B	163	167	Right-handed 310
Helix 36	AD9	B	171	190	Right-handed alpha
Helix 37	AE1	B	195	197	Right-handed 310
Helix 38	AE2	B	198	227	Right-handed alpha
Helix 39	AE3	B	232	240	Right-handed alpha
Helix 40	AE4	B	250	283	Right-handed alpha
Helix 41	AE5	B	283	298	Right-handed alpha
Helix 42	AE6	B	304	310	Right-handed alpha
Helix 43	AE7	B	311	325	Right-handed alpha
Helix 44	AE8	B	357	361	Right-handed alpha
Helix 45	AE9	B	363	368	Right-handed alpha
Helix 46	AF1	B	375	380	Right-handed 310
Helix 47	AF2	B	381	385	Right-handed 310
Helix 48	AF3	B	395	399	Right-handed 310
Helix 49	AF4	B	402	420	Right-handed alpha
Helix 50	AF5	C	11	15	Right-handed 310
Helix 51	AF6	C	16	20	Right-handed 310
Helix 52	AF7	C	24	37	Right-handed alpha
Helix 53	AF8	C	54	62	Right-handed alpha
Helix 54	AF9	C	72	83	Right-handed alpha
Helix 55	AG1	C	93	104	Right-handed alpha
Helix 56	AG2	C	105	107	Right-handed 310
Helix 57	AG3	C	108	132	Right-handed alpha
Helix 58	AG4	C	141	159	Right-handed alpha
Helix 59	AG5	C	163	167	Right-handed 310
Helix 60	AG6	C	171	189	Right-handed alpha
Helix 61	AG7	C	195	197	Right-handed 310
Helix 62	AG8	C	198	225	Right-handed alpha
Helix 63	AG9	C	232	240	Right-handed alpha
Helix 64	AH1	C	250	283	Right-handed alpha
Helix 65	AH2	C	283	298	Right-handed alpha
Helix 66	AH3	C	304	311	Right-handed alpha
Helix 67	AH4	C	311	325	Right-handed alpha
Helix 68	AH5	C	357	361	Right-handed alpha
Helix 69	AH6	C	363	368	Right-handed alpha
Helix 70	AH7	C	375	380	Right-handed 310
Helix 71	AH8	C	381	385	Right-handed 310
Helix 72	AH9	C	395	399	Right-handed 310
Helix 73	AI1	C	402	420	Right-handed alpha
Helix 74	AI2	D	11	15	Right-handed 310
Helix 75	AI3	D	16	21	Right-handed 310
Helix 76	AI4	D	24	37	Right-handed alpha
Helix 77	AI5	D	54	62	Right-handed alpha
Helix 78	AI6	D	72	83	Right-handed alpha
Helix 79	AI7	D	93	104	Right-handed alpha
Helix 80	AI8	D	105	107	Right-handed 310
Helix 81	AI9	D	108	132	Right-handed alpha
Helix 82	AJ1	D	141	159	Right-handed alpha
Helix 83	AJ2	D	163	167	Right-handed 310
Helix 84	AJ3	D	171	188	Right-handed alpha
Helix 85	AJ4	D	195	197	Right-handed 310
Helix 86	AJ5	D	198	225	Right-handed alpha
Helix 87	AJ6	D	232	240	Right-handed alpha
Helix 88	AJ7	D	250	283	Right-handed alpha
Helix 89	AJ8	D	283	298	Right-handed alpha
Helix 90	AJ9	D	304	310	Right-handed alpha
Helix 91	AK1	D	311	325	Right-handed alpha
Helix 92	AK2	D	342	344	Right-handed 310
Helix 93	AK3	D	357	361	Right-handed alpha
Helix 94	AK4	D	363	368	Right-handed alpha
Helix 95	AK5	D	375	380	Right-handed 310
Helix 96	AK6	D	381	385	Right-handed 310
Helix 97	AK7	D	395	399	Right-handed 310
Helix 98	AK8	D	402	420	Right-handed alpha
Helix 99	AK9	E	13	15	Right-handed 310
Helix 100	AL1	E	16	21	Right-handed 310
Helix 101	AL2	E	24	37	Right-handed alpha
Helix 102	AL3	E	54	62	Right-handed alpha
Helix 103	AL4	E	72	83	Right-handed alpha
Helix 104	AL5	E	93	104	Right-handed alpha
Helix 105	AL6	E	105	107	Right-handed 310
Helix 106	AL7	E	108	132	Right-handed alpha
Helix 107	AL8	E	141	157	Right-handed alpha
Helix 108	AL9	E	163	167	Right-handed 310
Helix 109	AM1	E	171	190	Right-handed alpha
Helix 110	AM2	E	195	197	Right-handed 310
Helix 111	AM3	E	198	225	Right-handed alpha
Helix 112	AM4	E	232	240	Right-handed alpha
Helix 113	AM5	E	250	283	Right-handed alpha
Helix 114	AM6	E	283	298	Right-handed alpha
Helix 115	AM7	E	304	309	Right-handed alpha
Helix 116	AM8	E	311	325	Right-handed alpha
Helix 117	AM9	E	357	361	Right-handed alpha
Helix 118	AN1	E	363	368	Right-handed alpha
Helix 119	AN2	E	375	380	Right-handed 310
Helix 120	AN3	E	381	385	Right-handed 310
Helix 121	AN4	E	395	399	Right-handed 310
Helix 122	AN5	E	402	420	Right-handed alpha
Helix 123	AN6	F	16	21	Right-handed 310
Helix 124	AN7	F	24	37	Right-handed alpha
Helix 125	AN8	F	54	62	Right-handed alpha
Helix 126	AN9	F	72	83	Right-handed alpha
Helix 127	AO1	F	85	89	Right-handed 310
Helix 128	AO2	F	93	104	Right-handed alpha
Helix 129	AO3	F	105	107	Right-handed 310
Helix 130	AO4	F	108	132	Right-handed alpha
Helix 131	AO5	F	141	159	Right-handed alpha
Helix 132	AO6	F	163	167	Right-handed 310
Helix 133	AO7	F	171	190	Right-handed alpha
Helix 134	AO8	F	195	197	Right-handed 310
Helix 135	AO9	F	198	224	Right-handed alpha
Helix 136	AP1	F	232	239	Right-handed alpha
Helix 137	AP2	F	250	283	Right-handed alpha
Helix 138	AP3	F	283	298	Right-handed alpha
Helix 139	AP4	F	304	311	Right-handed alpha
Helix 140	AP5	F	311	325	Right-handed alpha
Helix 141	AP6	F	342	344	Right-handed 310
Helix 142	AP7	F	357	361	Right-handed alpha
Helix 143	AP8	F	363	368	Right-handed alpha
Helix 144	AP9	F	375	379	Right-handed 310
Helix 145	AQ1	F	381	385	Right-handed 310
Helix 146	AQ2	F	395	399	Right-handed 310
Helix 147	AQ3	F	402	420	Right-handed alpha
Helix 148	AQ4	G	11	15	Right-handed 310
Helix 149	AQ5	G	16	21	Right-handed 310
Helix 150	AQ6	G	24	37	Right-handed alpha
Helix 151	AQ7	G	54	62	Right-handed alpha
Helix 152	AQ8	G	72	83	Right-handed alpha
Helix 153	AQ9	G	93	104	Right-handed alpha
Helix 154	AR1	G	105	107	Right-handed 310
Helix 155	AR2	G	108	132	Right-handed alpha
Helix 156	AR3	G	141	159	Right-handed alpha
Helix 157	AR4	G	163	167	Right-handed 310
Helix 158	AR5	G	171	190	Right-handed alpha
Helix 159	AR6	G	195	197	Right-handed 310
Helix 160	AR7	G	198	225	Right-handed alpha
Helix 161	AR8	G	232	240	Right-handed alpha
Helix 162	AR9	G	250	283	Right-handed alpha
Helix 163	AS1	G	283	298	Right-handed alpha
Helix 164	AS2	G	304	311	Right-handed alpha
Helix 165	AS3	G	311	325	Right-handed alpha
Helix 166	AS4	G	357	361	Right-handed alpha
Helix 167	AS5	G	363	368	Right-handed alpha
Helix 168	AS6	G	375	380	Right-handed 310
Helix 169	AS7	G	381	385	Right-handed 310
Helix 170	AS8	G	395	399	Right-handed 310
Helix 171	AS9	G	402	420	Right-handed alpha
Helix 172	AT1	H	11	15	Right-handed 310
Helix 173	AT2	H	16	21	Right-handed 310
Helix 174	AT3	H	24	37	Right-handed alpha
Helix 175	AT4	H	54	62	Right-handed alpha
Helix 176	AT5	H	72	83	Right-handed alpha
Helix 177	AT6	H	85	89	Right-handed 310
Helix 178	AT7	H	93	104	Right-handed alpha
Helix 179	AT8	H	105	107	Right-handed 310
Helix 180	AT9	H	108	132	Right-handed alpha
Helix 181	AU1	H	141	159	Right-handed alpha
Helix 182	AU2	H	163	167	Right-handed 310
Helix 183	AU3	H	171	187	Right-handed alpha
Helix 184	AU4	H	195	197	Right-handed 310
Helix 185	AU5	H	198	224	Right-handed alpha
Helix 186	AU6	H	232	240	Right-handed alpha
Helix 187	AU7	H	250	283	Right-handed alpha
Helix 188	AU8	H	283	298	Right-handed alpha
Helix 189	AU9	H	304	310	Right-handed alpha
Helix 190	AV1	H	311	325	Right-handed alpha
Helix 191	AV2	H	357	361	Right-handed alpha
Helix 192	AV3	H	363	368	Right-handed alpha
Helix 193	AV4	H	375	380	Right-handed 310
Helix 194	AV5	H	395	399	Right-handed 310
Helix 195	AV6	H	402	420	Right-handed alpha

There are 33 sheets in PDB entry 5JQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	48	52	anti-parallel
Strand 3	A	352	356	parallel
Strand 4	A	330	335	anti-parallel
Strand 5	A	67	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	445	450	anti-parallel
Strand 3	A	421	424	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	345	347	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	439	441	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	352	356	parallel
Strand 4	B	330	335	anti-parallel
Strand 5	B	67	70	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	445	450	anti-parallel
Strand 3	B	421	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	439	441	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	48	52	anti-parallel
Strand 3	C	352	356	parallel
Strand 4	C	330	335	anti-parallel
Strand 5	C	67	70	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	445	450	anti-parallel
Strand 3	C	421	424	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	345	347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	439	441	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	352	356	parallel
Strand 4	D	330	335	anti-parallel
Strand 5	D	67	69	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	445	450	anti-parallel
Strand 3	D	421	424	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	345	347	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	435	first strand
Strand 2	D	439	441	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	F	6	7	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	47	52	anti-parallel
Strand 3	E	352	356	parallel
Strand 4	E	330	335	anti-parallel
Strand 5	E	67	70	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	445	450	anti-parallel
Strand 3	E	421	424	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	345	347	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	439	441	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	44	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	352	356	parallel
Strand 4	F	330	335	anti-parallel
Strand 5	F	67	70	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	140	first strand
Strand 2	F	445	450	anti-parallel
Strand 3	F	421	424	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	345	347	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	433	435	first strand
Strand 2	F	439	441	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	44	first strand
Strand 2	G	47	52	anti-parallel
Strand 3	G	352	356	parallel
Strand 4	G	330	335	anti-parallel
Strand 5	G	67	70	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	445	450	anti-parallel
Strand 3	G	421	424	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	339	341	first strand
Strand 2	G	345	347	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	433	435	first strand
Strand 2	G	439	441	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	44	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	352	356	parallel
Strand 4	H	330	335	anti-parallel
Strand 5	H	67	70	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	445	450	anti-parallel
Strand 3	H	421	424	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	345	347	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	433	435	first strand
Strand 2	H	439	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JQU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQU