Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQX entry

There are 4 chains in PDB entry 5JQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20ARG 322
B
 ALA 19ARG 322
C
 LEU 20ARG 322
D
 LEU 20ARG 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5JQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 39Right-handed alpha
Helix 2
AA2
A
57 64Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
86 93Right-handed alpha
Helix 5
AA5
A
101 105Right-handed alpha
Helix 6
AA6
A
113 122Right-handed alpha
Helix 7
AA7
A
143 154Right-handed alpha
Helix 8
AA8
A
184 190Right-handed alpha
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
200 203Right-handed 310
Helix 11
AB2
A
217 221Right-handed alpha
Helix 12
AB3
A
227 229Right-handed 310
Helix 13
AB4
A
230 244Right-handed alpha
Helix 14
AB5
A
262 280Right-handed alpha
Helix 15
AB6
A
317 322Right-handed 310
Helix 16
AB7
B
32 39Right-handed alpha
Helix 17
AB8
B
57 64Right-handed alpha
Helix 18
AB9
B
65 69Right-handed 310
Helix 19
AC1
B
86 93Right-handed alpha
Helix 20
AC2
B
101 105Right-handed alpha
Helix 21
AC3
B
113 122Right-handed alpha
Helix 22
AC4
B
143 154Right-handed alpha
Helix 23
AC5
B
184 190Right-handed alpha
Helix 24
AC6
B
190 199Right-handed alpha
Helix 25
AC7
B
200 203Right-handed 310
Helix 26
AC8
B
217 221Right-handed alpha
Helix 27
AC9
B
227 229Right-handed 310
Helix 28
AD1
B
230 244Right-handed alpha
Helix 29
AD2
B
262 280Right-handed alpha
Helix 30
AD3
B
317 322Right-handed 310
Helix 31
AD4
C
32 39Right-handed alpha
Helix 32
AD5
C
57 64Right-handed alpha
Helix 33
AD6
C
65 69Right-handed 310
Helix 34
AD7
C
86 93Right-handed alpha
Helix 35
AD8
C
101 105Right-handed alpha
Helix 36
AD9
C
113 122Right-handed alpha
Helix 37
AE1
C
143 154Right-handed alpha
Helix 38
AE2
C
184 190Right-handed alpha
Helix 39
AE3
C
190 199Right-handed alpha
Helix 40
AE4
C
200 203Right-handed 310
Helix 41
AE5
C
217 221Right-handed alpha
Helix 42
AE6
C
227 229Right-handed 310
Helix 43
AE7
C
230 244Right-handed alpha
Helix 44
AE8
C
262 280Right-handed alpha
Helix 45
AE9
C
317 322Right-handed 310
Helix 46
AF1
D
32 39Right-handed alpha
Helix 47
AF2
D
57 64Right-handed alpha
Helix 48
AF3
D
65 69Right-handed 310
Helix 49
AF4
D
86 93Right-handed alpha
Helix 50
AF5
D
101 105Right-handed alpha
Helix 51
AF6
D
113 122Right-handed alpha
Helix 52
AF7
D
143 154Right-handed alpha
Helix 53
AF8
D
184 190Right-handed alpha
Helix 54
AF9
D
190 199Right-handed alpha
Helix 55
AG1
D
200 203Right-handed 310
Helix 56
AG2
D
217 221Right-handed alpha
Helix 57
AG3
D
227 229Right-handed 310
Helix 58
AG4
D
230 244Right-handed alpha
Helix 59
AG5
D
262 280Right-handed alpha
Helix 60
AG6
D
317 322Right-handed 310
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There are 8 sheets in PDB entry 5JQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
248 252parallel
Strand 3
A
160 164parallel
Strand 4
A
213 216anti-parallel
Strand 5
A
129 132anti-parallel
Strand 6
A
45 51parallel
Strand 7
A
75 80parallel
Strand 8
A
97 100parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
305 307anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
248 252parallel
Strand 3
B
160 164parallel
Strand 4
B
213 216anti-parallel
Strand 5
B
129 132anti-parallel
Strand 6
B
45 51parallel
Strand 7
B
75 80parallel
Strand 8
B
97 100parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
306 307anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 25first strand
Strand 2
C
248 252parallel
Strand 3
C
160 164parallel
Strand 4
C
213 216anti-parallel
Strand 5
C
129 132anti-parallel
Strand 6
C
45 51parallel
Strand 7
C
75 80parallel
Strand 8
C
97 100parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
305 307anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 25first strand
Strand 2
D
248 252parallel
Strand 3
D
160 164parallel
Strand 4
D
213 216anti-parallel
Strand 5
D
129 132anti-parallel
Strand 6
D
45 51parallel
Strand 7
D
75 80parallel
Strand 8
D
97 100parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 293first strand
Strand 2
D
305 307anti-parallel
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