Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JR2 entry

There are 12 chains in PDB entry 5JR2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	ALA 204
B	GLY 26	ALA 204
C	GLY 26	ALA 204
D	GLY 26	ALA 204
E	PRO 2	ARG 7
E	SER 9	CYS 12
F	PRO 2	ARG 7
F	SER 9	CYS 12
G	PRO 2	ARG 7
G	SER 9	CYS 12
H	PRO 2	ARG 7
H	SER 9	CYS 12

There are 16 helices in PDB entry 5JR2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	28	Right-handed 310
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	B	26	28	Right-handed 310
Helix 6	AA6	B	37	39	Right-handed 310
Helix 7	AA7	B	107	111	Right-handed 310
Helix 8	AA8	B	138	142	Right-handed 310
Helix 9	AA9	C	26	28	Right-handed 310
Helix 10	AB1	C	37	39	Right-handed 310
Helix 11	AB2	C	107	111	Right-handed 310
Helix 12	AB3	C	138	142	Right-handed 310
Helix 13	AB4	D	26	28	Right-handed 310
Helix 14	AB5	D	37	39	Right-handed 310
Helix 15	AB6	D	107	111	Right-handed 310
Helix 16	AB7	D	138	142	Right-handed 310

There are 20 sheets in PDB entry 5JR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	191	202	anti-parallel
Strand 3	A	66	73	anti-parallel
Strand 4	A	55	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	191	202	anti-parallel
Strand 3	A	97	105	anti-parallel
Strand 4	A	163	173	anti-parallel
Strand 5	A	154	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	82	85	anti-parallel
Strand 3	A	180	187	anti-parallel
Strand 4	A	89	90	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	82	85	anti-parallel
Strand 3	A	180	187	anti-parallel
Strand 4	A	121	129	anti-parallel
Strand 5	A	143	149	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	191	202	anti-parallel
Strand 3	B	66	73	anti-parallel
Strand 4	B	55	60	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	191	202	anti-parallel
Strand 3	B	97	105	anti-parallel
Strand 4	B	163	173	anti-parallel
Strand 5	B	154	158	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	82	85	anti-parallel
Strand 3	B	180	187	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	82	85	anti-parallel
Strand 3	B	180	187	anti-parallel
Strand 4	B	121	129	anti-parallel
Strand 5	B	143	149	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	192	202	anti-parallel
Strand 3	C	66	72	anti-parallel
Strand 4	C	55	60	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	192	202	anti-parallel
Strand 3	C	97	105	anti-parallel
Strand 4	C	163	173	anti-parallel
Strand 5	C	154	158	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	82	85	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	89	90	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	82	85	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	121	129	anti-parallel
Strand 5	C	143	149	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	192	202	anti-parallel
Strand 3	D	67	72	anti-parallel
Strand 4	D	55	59	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	192	202	anti-parallel
Strand 3	D	97	105	anti-parallel
Strand 4	D	163	173	anti-parallel
Strand 5	D	154	158	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	82	85	anti-parallel
Strand 3	D	180	187	anti-parallel
Strand 4	D	89	90	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	82	85	anti-parallel
Strand 3	D	180	187	anti-parallel
Strand 4	D	121	129	anti-parallel
Strand 5	D	143	149	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	10	11	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	10	11	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	10	11	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	10	11	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JR2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR2