Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JR6 entry

There are 3 chains in PDB entry 5JR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 129	ILE 774
B	VAL 150	ALA 773
F	PRO 2	ALA 4

There are 48 helices in PDB entry 5JR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	146	Right-handed alpha
Helix 2	AA2	A	165	169	Right-handed 310
Helix 3	AA3	A	170	176	Right-handed alpha
Helix 4	AA4	A	199	207	Right-handed alpha
Helix 5	AA5	A	223	231	Right-handed alpha
Helix 6	AA6	A	245	260	Right-handed alpha
Helix 7	AA7	A	313	318	Right-handed alpha
Helix 8	AA8	A	320	335	Right-handed alpha
Helix 9	AA9	A	346	355	Right-handed alpha
Helix 10	AB1	A	391	394	Right-handed 310
Helix 11	AB2	A	395	401	Right-handed alpha
Helix 12	AB3	A	402	404	Right-handed 310
Helix 13	AB4	A	414	422	Right-handed alpha
Helix 14	AB5	A	423	427	Right-handed 310
Helix 15	AB6	A	449	455	Right-handed alpha
Helix 16	AB7	A	456	459	Right-handed 310
Helix 17	AB8	A	466	474	Right-handed alpha
Helix 18	AB9	A	476	508	Right-handed alpha
Helix 19	AC1	A	509	513	Right-handed 310
Helix 20	AC2	A	514	528	Right-handed alpha
Helix 21	AC3	A	545	549	Right-handed 310
Helix 22	AC4	A	592	612	Right-handed alpha
Helix 23	AC5	A	619	633	Right-handed alpha
Helix 24	AC6	A	718	722	Right-handed 310
Helix 25	AC7	A	728	752	Right-handed alpha
Helix 26	AC8	A	758	769	Right-handed alpha
Helix 27	AC9	B	165	169	Right-handed 310
Helix 28	AD1	B	223	229	Right-handed alpha
Helix 29	AD2	B	245	259	Right-handed alpha
Helix 30	AD3	B	313	318	Right-handed alpha
Helix 31	AD4	B	320	334	Right-handed alpha
Helix 32	AD5	B	346	355	Right-handed alpha
Helix 33	AD6	B	391	394	Right-handed 310
Helix 34	AD7	B	395	405	Right-handed alpha
Helix 35	AD8	B	414	422	Right-handed alpha
Helix 36	AD9	B	449	454	Right-handed alpha
Helix 37	AE1	B	455	456	Right-handed 310
Helix 38	AE2	B	457	459	Right-handed 310
Helix 39	AE3	B	467	472	Right-handed alpha
Helix 40	AE4	B	476	507	Right-handed alpha
Helix 41	AE5	B	508	513	Right-handed 310
Helix 42	AE6	B	514	528	Right-handed alpha
Helix 43	AE7	B	545	549	Right-handed 310
Helix 44	AE8	B	592	612	Right-handed alpha
Helix 45	AE9	B	619	634	Right-handed alpha
Helix 46	AF1	B	718	722	Right-handed 310
Helix 47	AF2	B	728	753	Right-handed alpha
Helix 48	AF3	B	758	769	Right-handed alpha

There are 16 sheets in PDB entry 5JR6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	192	196	parallel
Strand 3	A	182	186	anti-parallel
Strand 4	A	150	154	anti-parallel
Strand 5	A	236	240	parallel
Strand 6	A	288	292	parallel
Strand 7	A	266	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	356	357	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	381	389	parallel
Strand 3	A	369	376	anti-parallel
Strand 4	A	341	344	anti-parallel
Strand 5	A	442	444	parallel
Strand 6	A	461	463	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	535	first strand
Strand 2	A	573	575	anti-parallel
Strand 3	A	578	579	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	566	571	anti-parallel
Strand 3	A	582	587	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	705	711	anti-parallel
Strand 3	A	691	700	anti-parallel
Strand 4	A	672	675	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	645	first strand
Strand 2	A	654	659	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	685	688	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	151	154	anti-parallel
Strand 3	B	238	240	parallel
Strand 4	B	290	292	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	356	357	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	411	first strand
Strand 2	B	382	389	parallel
Strand 3	B	369	375	anti-parallel
Strand 4	B	341	344	anti-parallel
Strand 5	B	442	444	parallel
Strand 6	B	461	463	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	535	first strand
Strand 2	B	573	575	anti-parallel
Strand 3	B	578	579	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	566	571	anti-parallel
Strand 3	B	582	587	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	705	711	anti-parallel
Strand 3	B	691	700	anti-parallel
Strand 4	B	672	675	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	645	first strand
Strand 2	B	654	659	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	681	first strand
Strand 2	B	685	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR6