Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JR7 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 5JR7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 13	PHE 138
A	GLU 140	TRP 196
A	LEU 198	VAL 337
A	ILE 339	PHE 350
B	ARG 92	GLY 358
C	GLU 13	PHE 138
C	GLU 140	TRP 196
C	LEU 198	VAL 337
C	ILE 339	PHE 350
D	ARG 92	LEU 357

There are 50 helices in PDB entry 5JR7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	39	41	Right-handed 310
Helix 3	AA3	A	76	82	Right-handed alpha
Helix 4	AA4	A	84	98	Right-handed alpha
Helix 5	AA5	A	127	136	Right-handed alpha
Helix 6	AA6	A	139	160	Right-handed alpha
Helix 7	AA7	A	168	170	Right-handed 310
Helix 8	AA8	A	201	205	Right-handed 310
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	218	234	Right-handed alpha
Helix 11	AB2	A	242	253	Right-handed alpha
Helix 12	AB3	A	262	273	Right-handed alpha
Helix 13	AB4	A	288	293	Right-handed alpha
Helix 14	AB5	A	294	298	Right-handed 310
Helix 15	AB6	A	301	307	Right-handed alpha
Helix 16	AB7	B	104	111	Right-handed alpha
Helix 17	AB8	B	119	131	Right-handed alpha
Helix 18	AB9	B	133	138	Right-handed alpha
Helix 19	AC1	B	140	151	Right-handed alpha
Helix 20	AC2	B	199	204	Right-handed 310
Helix 21	AC3	B	226	250	Right-handed alpha
Helix 22	AC4	B	251	255	Right-handed 310
Helix 23	AC5	B	258	269	Right-handed alpha
Helix 24	AC6	B	324	329	Right-handed alpha
Helix 25	AC7	B	350	357	Right-handed alpha
Helix 26	AC8	C	15	32	Right-handed alpha
Helix 27	AC9	C	39	43	Right-handed 310
Helix 28	AD1	C	76	82	Right-handed alpha
Helix 29	AD2	C	84	96	Right-handed alpha
Helix 30	AD3	C	127	136	Right-handed alpha
Helix 31	AD4	C	139	160	Right-handed alpha
Helix 32	AD5	C	168	170	Right-handed 310
Helix 33	AD6	C	201	205	Right-handed 310
Helix 34	AD7	C	206	211	Right-handed alpha
Helix 35	AD8	C	218	234	Right-handed alpha
Helix 36	AD9	C	242	251	Right-handed alpha
Helix 37	AE1	C	262	273	Right-handed alpha
Helix 38	AE2	C	288	293	Right-handed alpha
Helix 39	AE3	C	294	298	Right-handed 310
Helix 40	AE4	C	301	307	Right-handed alpha
Helix 41	AE5	D	104	109	Right-handed alpha
Helix 42	AE6	D	119	124	Right-handed alpha
Helix 43	AE7	D	124	131	Right-handed alpha
Helix 44	AE8	D	133	138	Right-handed alpha
Helix 45	AE9	D	140	151	Right-handed alpha
Helix 46	AF1	D	200	205	Right-handed alpha
Helix 47	AF2	D	226	251	Right-handed alpha
Helix 48	AF3	D	258	267	Right-handed alpha
Helix 49	AF4	D	324	329	Right-handed alpha
Helix 50	AF5	D	349	357	Right-handed alpha

There are 18 sheets in PDB entry 5JR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	51	first strand
Strand 2	A	55	62	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	115	121	anti-parallel
Strand 5	A	106	111	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	189	190	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	180	182	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	B	98	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	219	225	anti-parallel
Strand 3	B	171	177	anti-parallel
Strand 4	B	197	198	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	212	215	anti-parallel
Strand 3	B	180	184	anti-parallel
Strand 4	B	187	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	336	349	anti-parallel
Strand 3	B	289	302	anti-parallel
Strand 4	B	311	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	336	349	anti-parallel
Strand 3	B	289	302	anti-parallel
Strand 4	B	321	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	331	332	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	56	62	anti-parallel
Strand 3	C	67	75	anti-parallel
Strand 4	C	115	121	anti-parallel
Strand 5	C	106	110	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	189	190	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	180	182	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	D	98	99	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	156	first strand
Strand 2	D	219	225	anti-parallel
Strand 3	D	171	175	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	212	215	anti-parallel
Strand 3	D	180	184	anti-parallel
Strand 4	D	187	192	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	347	anti-parallel
Strand 3	D	291	303	anti-parallel
Strand 4	D	310	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	347	anti-parallel
Strand 3	D	291	303	anti-parallel
Strand 4	D	321	322	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	287	first strand
Strand 2	D	331	332	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JR7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JR7