Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRH entry

There are 2 chains in PDB entry 5JRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 5	ALA 647
B	LYS 6	GLU 644

There are 50 helices in PDB entry 5JRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	17	Right-handed alpha
Helix 2	AA2	A	20	34	Right-handed alpha
Helix 3	AA3	A	34	43	Right-handed alpha
Helix 4	AA4	A	44	46	Right-handed 310
Helix 5	AA5	A	76	82	Right-handed alpha
Helix 6	AA6	A	85	90	Right-handed alpha
Helix 7	AA7	A	110	127	Right-handed alpha
Helix 8	AA8	A	142	156	Right-handed alpha
Helix 9	AA9	A	167	179	Right-handed alpha
Helix 10	AB1	A	197	207	Right-handed alpha
Helix 11	AB2	A	237	244	Right-handed alpha
Helix 12	AB3	A	278	293	Right-handed alpha
Helix 13	AB4	A	309	315	Right-handed alpha
Helix 14	AB5	A	317	323	Right-handed alpha
Helix 15	AB6	A	340	350	Right-handed alpha
Helix 16	AB7	A	357	366	Right-handed alpha
Helix 17	AB8	A	367	372	Right-handed 310
Helix 18	AB9	A	391	402	Right-handed alpha
Helix 19	AC1	A	415	419	Right-handed 310
Helix 20	AC2	A	480	490	Right-handed alpha
Helix 21	AC3	A	529	538	Right-handed alpha
Helix 22	AC4	A	572	587	Right-handed alpha
Helix 23	AC5	A	588	592	Right-handed 310
Helix 24	AC6	A	611	621	Right-handed alpha
Helix 25	AC7	A	636	647	Right-handed alpha
Helix 26	AC8	B	10	17	Right-handed alpha
Helix 27	AC9	B	20	34	Right-handed alpha
Helix 28	AD1	B	34	43	Right-handed alpha
Helix 29	AD2	B	44	46	Right-handed 310
Helix 30	AD3	B	76	82	Right-handed alpha
Helix 31	AD4	B	85	90	Right-handed alpha
Helix 32	AD5	B	110	127	Right-handed alpha
Helix 33	AD6	B	142	156	Right-handed alpha
Helix 34	AD7	B	167	179	Right-handed alpha
Helix 35	AD8	B	197	207	Right-handed alpha
Helix 36	AD9	B	237	244	Right-handed alpha
Helix 37	AE1	B	278	293	Right-handed alpha
Helix 38	AE2	B	309	315	Right-handed alpha
Helix 39	AE3	B	317	323	Right-handed alpha
Helix 40	AE4	B	340	350	Right-handed alpha
Helix 41	AE5	B	357	366	Right-handed alpha
Helix 42	AE6	B	367	372	Right-handed 310
Helix 43	AE7	B	391	402	Right-handed alpha
Helix 44	AE8	B	415	419	Right-handed 310
Helix 45	AE9	B	480	490	Right-handed alpha
Helix 46	AF1	B	529	538	Right-handed alpha
Helix 47	AF2	B	572	587	Right-handed alpha
Helix 48	AF3	B	588	592	Right-handed 310
Helix 49	AF4	B	611	621	Right-handed alpha
Helix 50	AF5	B	635	644	Right-handed alpha

There are 17 sheets in PDB entry 5JRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	66	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	253	254	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	326	330	parallel
Strand 4	A	300	303	parallel
Strand 5	A	353	356	parallel
Strand 6	A	382	386	parallel
Strand 7	A	409	412	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	216	220	parallel
Strand 3	A	182	186	parallel
Strand 4	A	134	138	parallel
Strand 5	A	158	161	parallel
Strand 6	A	258	264	parallel
Strand 7	A	272	277	anti-parallel
Strand 8	A	476	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	194	196	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	449	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	496	504	anti-parallel
Strand 4	A	510	515	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	525	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	552	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	595	598	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	64	69	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	253	254	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	326	330	parallel
Strand 4	B	300	303	parallel
Strand 5	B	353	356	parallel
Strand 6	B	382	386	parallel
Strand 7	B	409	412	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	134	138	parallel
Strand 3	B	182	186	parallel
Strand 4	B	216	220	parallel
Strand 5	B	234	236	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	194	196	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	264	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	476	477	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	460	466	anti-parallel
Strand 3	B	496	504	anti-parallel
Strand 4	B	510	515	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	522	first strand
Strand 2	B	525	528	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	552	first strand
Strand 2	B	556	565	anti-parallel
Strand 3	B	595	598	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRH