Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JRJ entry

There is 1 chain in PDB entry 5JRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 28Right-handed alpha
Helix 2
AA2
A
51 58Right-handed alpha
Helix 3
AA3
A
78 93Right-handed alpha
Helix 4
AA4
A
107 114Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
128 142Right-handed alpha
Helix 7
AA7
A
158 163Right-handed alpha
Helix 8
AA8
A
177 193Right-handed alpha
Helix 9
AA9
A
220 226Right-handed alpha
Helix 10
AB1
A
276 288Right-handed alpha
Helix 11
AB2
A
308 319Right-handed alpha
Helix 12
AB3
A
319 335Right-handed alpha
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There are 3 sheets in PDB entry 5JRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
63 64anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
97 101parallel
Strand 3
A
147 151parallel
Strand 4
A
195 201parallel
Strand 5
A
68 73parallel
Strand 6
A
228 240parallel
Strand 7
A
243 256anti-parallel
Strand 8
A
264 270anti-parallel
Strand 9
A
274 275anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
297 300anti-parallel
Strand 3
A
303 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il