Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRK entry

There are 2 chains in PDB entry 5JRK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	PRO 726
B	SER 29	ALA 723

There are 37 helices in PDB entry 5JRK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	41	Right-handed alpha
Helix 2	AA2	A	187	193	Right-handed alpha
Helix 3	AA3	A	227	233	Right-handed alpha
Helix 4	AA4	A	414	419	Right-handed alpha
Helix 5	AA5	A	471	476	Right-handed alpha
Helix 6	AA6	A	479	486	Right-handed alpha
Helix 7	AA7	A	497	500	Right-handed 310
Helix 8	AA8	A	501	514	Right-handed alpha
Helix 9	AA9	A	519	528	Right-handed alpha
Helix 10	AB1	A	528	545	Right-handed alpha
Helix 11	AB2	A	559	572	Right-handed alpha
Helix 12	AB3	A	587	589	Right-handed 310
Helix 13	AB4	A	590	603	Right-handed alpha
Helix 14	AB5	A	610	618	Right-handed alpha
Helix 15	AB6	A	622	626	Right-handed 310
Helix 16	AB7	A	638	651	Right-handed alpha
Helix 17	AB8	A	675	694	Right-handed alpha
Helix 18	AB9	A	706	717	Right-handed alpha
Helix 19	AC1	A	719	723	Right-handed 310
Helix 20	AC2	B	35	41	Right-handed alpha
Helix 21	AC3	B	187	192	Right-handed alpha
Helix 22	AC4	B	193	195	Right-handed 310
Helix 23	AC5	B	414	420	Right-handed alpha
Helix 24	AC6	B	471	476	Right-handed alpha
Helix 25	AC7	B	479	486	Right-handed alpha
Helix 26	AC8	B	497	500	Right-handed 310
Helix 27	AC9	B	501	514	Right-handed alpha
Helix 28	AD1	B	519	528	Right-handed alpha
Helix 29	AD2	B	528	545	Right-handed alpha
Helix 30	AD3	B	559	572	Right-handed alpha
Helix 31	AD4	B	587	589	Right-handed 310
Helix 32	AD5	B	590	603	Right-handed alpha
Helix 33	AD6	B	610	618	Right-handed alpha
Helix 34	AD7	B	622	626	Right-handed 310
Helix 35	AD8	B	638	651	Right-handed alpha
Helix 36	AD9	B	675	694	Right-handed alpha
Helix 37	AE1	B	705	717	Right-handed alpha

There are 21 sheets in PDB entry 5JRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	56	64	anti-parallel
Strand 3	A	71	79	anti-parallel
Strand 4	A	85	91	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	106	111	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	127	131	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	155	157	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	171	178	anti-parallel
Strand 3	A	204	211	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	271	276	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	314	320	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	332	334	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	363	365	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	377	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	396	401	anti-parallel
Strand 4	A	406	412	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	427	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	489	493	anti-parallel
Strand 4	A	454	459	parallel
Strand 5	A	548	558	parallel
Strand 6	A	577	581	parallel
Strand 7	A	629	634	parallel
Strand 8	A	654	659	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	437	438	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	56	64	anti-parallel
Strand 3	B	71	79	anti-parallel
Strand 4	B	85	91	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	127	131	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	155	157	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	171	178	anti-parallel
Strand 3	B	204	211	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	243	246	anti-parallel
Strand 3	B	262	265	anti-parallel
Strand 4	B	270	272	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	297	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	314	320	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	332	334	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	353	359	anti-parallel
Strand 4	B	363	365	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	377	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	396	401	anti-parallel
Strand 4	B	406	412	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	437	443	anti-parallel
Strand 3	B	489	493	anti-parallel
Strand 4	B	454	459	parallel
Strand 5	B	548	558	parallel
Strand 6	B	577	581	parallel
Strand 7	B	629	634	parallel
Strand 8	B	655	659	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRK