Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRL entry

There are 4 chains in PDB entry 5JRL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	ARG 721
B	LYS 30	CYS 722
C	GLY 31	ASP 720
D	GLY 31	CYS 722

There are 73 helices in PDB entry 5JRL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	42	Right-handed alpha
Helix 2	AA2	A	188	193	Right-handed alpha
Helix 3	AA3	A	227	233	Right-handed alpha
Helix 4	AA4	A	280	284	Right-handed 310
Helix 5	AA5	A	414	419	Right-handed alpha
Helix 6	AA6	A	471	476	Right-handed alpha
Helix 7	AA7	A	479	486	Right-handed alpha
Helix 8	AA8	A	497	500	Right-handed 310
Helix 9	AA9	A	501	514	Right-handed alpha
Helix 10	AB1	A	519	528	Right-handed alpha
Helix 11	AB2	A	528	545	Right-handed alpha
Helix 12	AB3	A	559	572	Right-handed alpha
Helix 13	AB4	A	587	591	Right-handed 310
Helix 14	AB5	A	594	603	Right-handed alpha
Helix 15	AB6	A	610	618	Right-handed alpha
Helix 16	AB7	A	619	626	Right-handed 310
Helix 17	AB8	A	638	651	Right-handed alpha
Helix 18	AB9	A	675	696	Right-handed alpha
Helix 19	AC1	A	707	717	Right-handed alpha
Helix 20	AC2	B	35	42	Right-handed alpha
Helix 21	AC3	B	188	193	Right-handed alpha
Helix 22	AC4	B	227	232	Right-handed alpha
Helix 23	AC5	B	414	419	Right-handed alpha
Helix 24	AC6	B	471	476	Right-handed alpha
Helix 25	AC7	B	479	486	Right-handed alpha
Helix 26	AC8	B	497	500	Right-handed 310
Helix 27	AC9	B	501	514	Right-handed alpha
Helix 28	AD1	B	519	528	Right-handed alpha
Helix 29	AD2	B	528	545	Right-handed alpha
Helix 30	AD3	B	559	572	Right-handed alpha
Helix 31	AD4	B	587	591	Right-handed 310
Helix 32	AD5	B	594	603	Right-handed alpha
Helix 33	AD6	B	610	618	Right-handed alpha
Helix 34	AD7	B	622	626	Right-handed 310
Helix 35	AD8	B	638	651	Right-handed alpha
Helix 36	AD9	B	675	694	Right-handed alpha
Helix 37	AE1	B	706	717	Right-handed alpha
Helix 38	AE2	C	35	42	Right-handed alpha
Helix 39	AE3	C	188	193	Right-handed alpha
Helix 40	AE4	C	227	232	Right-handed alpha
Helix 41	AE5	C	414	419	Right-handed alpha
Helix 42	AE6	C	471	476	Right-handed alpha
Helix 43	AE7	C	479	486	Right-handed alpha
Helix 44	AE8	C	497	500	Right-handed 310
Helix 45	AE9	C	501	514	Right-handed alpha
Helix 46	AF1	C	519	528	Right-handed alpha
Helix 47	AF2	C	528	545	Right-handed alpha
Helix 48	AF3	C	559	572	Right-handed alpha
Helix 49	AF4	C	587	591	Right-handed 310
Helix 50	AF5	C	594	603	Right-handed alpha
Helix 51	AF6	C	610	618	Right-handed alpha
Helix 52	AF7	C	622	626	Right-handed 310
Helix 53	AF8	C	638	651	Right-handed alpha
Helix 54	AF9	C	675	694	Right-handed alpha
Helix 55	AG1	C	706	717	Right-handed alpha
Helix 56	AG2	D	35	41	Right-handed alpha
Helix 57	AG3	D	188	193	Right-handed alpha
Helix 58	AG4	D	227	232	Right-handed alpha
Helix 59	AG5	D	416	420	Right-handed 310
Helix 60	AG6	D	471	476	Right-handed alpha
Helix 61	AG7	D	479	486	Right-handed alpha
Helix 62	AG8	D	497	500	Right-handed 310
Helix 63	AG9	D	501	514	Right-handed alpha
Helix 64	AH1	D	519	528	Right-handed alpha
Helix 65	AH2	D	528	545	Right-handed alpha
Helix 66	AH3	D	559	572	Right-handed alpha
Helix 67	AH4	D	587	589	Right-handed 310
Helix 68	AH5	D	590	603	Right-handed alpha
Helix 69	AH6	D	610	618	Right-handed alpha
Helix 70	AH7	D	622	626	Right-handed 310
Helix 71	AH8	D	638	651	Right-handed alpha
Helix 72	AH9	D	675	696	Right-handed alpha
Helix 73	AI1	D	706	717	Right-handed alpha

There are 41 sheets in PDB entry 5JRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	56	65	anti-parallel
Strand 3	A	70	79	anti-parallel
Strand 4	A	85	91	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	106	111	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	127	131	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	155	157	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	171	178	anti-parallel
Strand 3	A	204	211	anti-parallel
Strand 4	A	217	224	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	C	654	659	anti-parallel
Strand 3	C	629	634	parallel
Strand 4	C	577	581	parallel
Strand 5	C	548	558	parallel
Strand 6	C	454	459	parallel
Strand 7	C	489	493	parallel
Strand 8	C	440	443	anti-parallel
Strand 9	C	425	427	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	243	247	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	271	272	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	314	320	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	332	334	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	363	364	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	377	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	396	401	anti-parallel
Strand 4	A	406	412	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	437	443	anti-parallel
Strand 3	A	489	493	anti-parallel
Strand 4	A	454	459	parallel
Strand 5	A	548	558	parallel
Strand 6	A	577	581	parallel
Strand 7	A	629	634	parallel
Strand 8	A	655	659	parallel
Strand 9	C	186	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	56	64	anti-parallel
Strand 3	B	71	79	anti-parallel
Strand 4	B	85	91	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	127	131	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	155	157	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	171	178	anti-parallel
Strand 3	B	204	211	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	243	247	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	271	272	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	297	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	315	320	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	341	347	anti-parallel
Strand 3	B	332	334	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	341	347	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	363	366	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	377	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	396	401	anti-parallel
Strand 4	B	406	412	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	437	443	anti-parallel
Strand 3	B	489	493	anti-parallel
Strand 4	B	454	459	parallel
Strand 5	B	548	558	parallel
Strand 6	B	577	581	parallel
Strand 7	B	629	634	parallel
Strand 8	B	655	659	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	50	first strand
Strand 2	C	56	65	anti-parallel
Strand 3	C	70	79	anti-parallel
Strand 4	C	85	91	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	99	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	127	131	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	155	157	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	171	178	anti-parallel
Strand 3	C	204	211	anti-parallel
Strand 4	C	217	224	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	243	248	anti-parallel
Strand 3	C	260	265	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	297	first strand
Strand 2	C	303	308	anti-parallel
Strand 3	C	315	320	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	341	347	anti-parallel
Strand 3	C	332	334	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	341	347	anti-parallel
Strand 3	C	353	358	anti-parallel
Strand 4	C	363	366	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	377	first strand
Strand 2	C	383	389	anti-parallel
Strand 3	C	396	401	anti-parallel
Strand 4	C	406	412	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	431	first strand
Strand 2	C	437	438	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	56	64	anti-parallel
Strand 3	D	71	79	anti-parallel
Strand 4	D	85	91	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	99	first strand
Strand 2	D	106	111	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	127	131	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	155	157	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	171	178	anti-parallel
Strand 3	D	204	211	anti-parallel
Strand 4	D	217	224	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	243	249	anti-parallel
Strand 3	D	259	265	anti-parallel
Strand 4	D	271	273	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	297	first strand
Strand 2	D	304	308	anti-parallel
Strand 3	D	315	319	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	341	347	anti-parallel
Strand 3	D	332	334	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	341	347	anti-parallel
Strand 3	D	353	359	anti-parallel
Strand 4	D	362	365	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	377	first strand
Strand 2	D	383	389	anti-parallel
Strand 3	D	396	401	anti-parallel
Strand 4	D	406	412	anti-parallel

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There are 8 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	437	443	anti-parallel
Strand 3	D	489	493	anti-parallel
Strand 4	D	454	459	parallel
Strand 5	D	548	558	parallel
Strand 6	D	577	581	parallel
Strand 7	D	629	634	parallel
Strand 8	D	654	659	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRL