Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JRP entry

There are 2 chains in PDB entry 5JRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 3GLY 253
H
 GLN 1LYS 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5JRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
97 101Right-handed 310
Helix 2
AA2
L
162 168Right-handed alpha
Helix 3
AA3
L
224 228Right-handed alpha
Helix 4
AA4
H
97 101Right-handed 310
Helix 5
AA5
H
186 188Right-handed 310
Helix 6
AA6
H
217 219Right-handed 310
Helix 7
AA7
H
231 234Right-handed 310
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There are 11 sheets in PDB entry 5JRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
88 93anti-parallel
Strand 4
L
78 83anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
143 147parallel
Strand 3
L
102 110anti-parallel
Strand 4
L
42 46anti-parallel
Strand 5
L
53 57anti-parallel
Strand 6
L
69 70anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
143 147parallel
Strand 3
L
102 110anti-parallel
Strand 4
L
136 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
155 159first strand
Strand 2
L
170 180anti-parallel
Strand 3
L
214 223anti-parallel
Strand 4
L
200 204anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
194 195first strand
Strand 2
L
186 191anti-parallel
Strand 3
L
232 238anti-parallel
Strand 4
L
246 251anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
88 93anti-parallel
Strand 4
H
78 83anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
143 147parallel
Strand 3
H
102 112anti-parallel
Strand 4
H
39 46anti-parallel
Strand 5
H
53 58anti-parallel
Strand 6
H
68 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
143 147parallel
Strand 3
H
102 112anti-parallel
Strand 4
H
133 139anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 160first strand
Strand 2
H
165 175anti-parallel
Strand 3
H
206 215anti-parallel
Strand 4
H
193 195anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 160first strand
Strand 2
H
165 175anti-parallel
Strand 3
H
206 215anti-parallel
Strand 4
H
199 200anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
181 184first strand
Strand 2
H
224 230anti-parallel
Strand 3
H
235 241anti-parallel
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