Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRU entry

There are 6 chains in PDB entry 5JRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 186
B	MET 1	TYR 185
C	MET 1	GLU 184
D	MET 1	LYS 187
E	MET 1	LYS 186
F	MET 1	LYS 187

There are 42 helices in PDB entry 5JRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	18	Right-handed alpha
Helix 2	AA2	A	18	29	Right-handed alpha
Helix 3	AA3	A	44	60	Right-handed alpha
Helix 4	AA4	A	62	82	Right-handed alpha
Helix 5	AA5	A	83	86	Right-handed 310
Helix 6	AA6	A	90	109	Right-handed alpha
Helix 7	AA7	A	137	153	Right-handed alpha
Helix 8	AA8	B	2	18	Right-handed alpha
Helix 9	AA9	B	18	29	Right-handed alpha
Helix 10	AB1	B	44	60	Right-handed alpha
Helix 11	AB2	B	62	82	Right-handed alpha
Helix 12	AB3	B	83	86	Right-handed 310
Helix 13	AB4	B	90	109	Right-handed alpha
Helix 14	AB5	B	137	153	Right-handed alpha
Helix 15	AB6	C	2	18	Right-handed alpha
Helix 16	AB7	C	18	29	Right-handed alpha
Helix 17	AB8	C	44	60	Right-handed alpha
Helix 18	AB9	C	62	82	Right-handed alpha
Helix 19	AC1	C	83	86	Right-handed 310
Helix 20	AC2	C	90	109	Right-handed alpha
Helix 21	AC3	C	137	153	Right-handed alpha
Helix 22	AC4	D	2	18	Right-handed alpha
Helix 23	AC5	D	18	29	Right-handed alpha
Helix 24	AC6	D	44	60	Right-handed alpha
Helix 25	AC7	D	62	82	Right-handed alpha
Helix 26	AC8	D	83	86	Right-handed 310
Helix 27	AC9	D	90	109	Right-handed alpha
Helix 28	AD1	D	137	153	Right-handed alpha
Helix 29	AD2	E	2	18	Right-handed alpha
Helix 30	AD3	E	18	29	Right-handed alpha
Helix 31	AD4	E	44	60	Right-handed alpha
Helix 32	AD5	E	62	82	Right-handed alpha
Helix 33	AD6	E	83	86	Right-handed 310
Helix 34	AD7	E	90	109	Right-handed alpha
Helix 35	AD8	E	137	153	Right-handed alpha
Helix 36	AD9	F	2	18	Right-handed alpha
Helix 37	AE1	F	18	28	Right-handed alpha
Helix 38	AE2	F	44	60	Right-handed alpha
Helix 39	AE3	F	62	82	Right-handed alpha
Helix 40	AE4	F	83	86	Right-handed 310
Helix 41	AE5	F	90	109	Right-handed alpha
Helix 42	AE6	F	137	153	Right-handed alpha

There are 6 sheets in PDB entry 5JRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	123	first strand
Strand 2	A	126	133	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	156	166	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	123	first strand
Strand 2	B	126	133	anti-parallel
Strand 3	B	170	178	anti-parallel
Strand 4	B	156	164	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	123	first strand
Strand 2	C	126	133	anti-parallel
Strand 3	C	170	178	anti-parallel
Strand 4	C	156	165	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	123	first strand
Strand 2	D	126	133	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	156	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	123	first strand
Strand 2	E	126	133	anti-parallel
Strand 3	E	169	177	anti-parallel
Strand 4	E	157	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	123	first strand
Strand 2	F	126	133	anti-parallel
Strand 3	F	169	178	anti-parallel
Strand 4	F	156	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRU