Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JRY entry

There is 1 chain in PDB entry 5JRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5JRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
53 60Right-handed alpha
Helix 3
AA3
A
61 79Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
94 117Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
157 171Right-handed alpha
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
209 213Right-handed 310
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
230 241Right-handed alpha
Helix 12
AB3
A
262 264Right-handed 310
Helix 13
AB4
A
265 279Right-handed alpha
Helix 14
AB5
A
280 283Right-handed 310
Helix 15
AB6
A
297 312Right-handed alpha
Helix 16
AB7
A
329 346Right-handed alpha
Helix 17
AB8
A
373 378Right-handed alpha
Helix 18
AB9
A
392 402Right-handed alpha
Helix 19
AC1
A
415 426Right-handed alpha
Helix 20
AC2
A
449 451Right-handed 310
Helix 21
AC3
A
458 466Right-handed alpha
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There are 6 sheets in PDB entry 5JRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
31 35parallel
Strand 3
A
21 24anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
467 475anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
174 177parallel
Strand 3
A
147 150parallel
Strand 4
A
224 228parallel
Strand 5
A
245 249parallel
Strand 6
A
453 454anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
384 390parallel
Strand 4
A
290 294parallel
Strand 5
A
255 258parallel
Strand 6
A
408 412parallel
Strand 7
A
430 433parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
360 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il