Analysis of interatomic Contacts of Structural Units in PDB entry:
5JS4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JS4 entry

There are 3 chains in PDB entry 5JS4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	SER 565
B	THR 19	SER 565
C	THR 19	PHE 233

There are 18 helices in PDB entry 5JS4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	86	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed 310
Helix 3	AA3	A	105	115	Right-handed alpha
Helix 4	AA4	A	152	158	Right-handed alpha
Helix 5	AA5	A	167	171	Right-handed 310
Helix 6	AA6	A	529	535	Right-handed alpha
Helix 7	AA7	B	81	86	Right-handed alpha
Helix 8	AA8	B	91	96	Right-handed 310
Helix 9	AA9	B	105	115	Right-handed alpha
Helix 10	AB1	B	152	158	Right-handed alpha
Helix 11	AB2	B	167	171	Right-handed 310
Helix 12	AB3	B	529	535	Right-handed alpha
Helix 13	AB4	C	81	86	Right-handed alpha
Helix 14	AB5	C	91	96	Right-handed 310
Helix 15	AB6	C	105	115	Right-handed alpha
Helix 16	AB7	C	152	158	Right-handed alpha
Helix 17	AB8	C	167	171	Right-handed 310
Helix 18	AB9	C	529	535	Right-handed alpha

There are 29 sheets in PDB entry 5JS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	128	132	parallel
Strand 3	A	159	164	parallel
Strand 4	A	182	191	parallel
Strand 5	A	199	216	parallel
Strand 6	A	220	239	parallel
Strand 7	A	244	248	parallel
Strand 8	A	272	276	parallel
Strand 9	A	297	299	parallel
Strand 10	A	324	326	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	142	144	parallel
Strand 3	A	182	191	parallel
Strand 4	A	199	216	parallel
Strand 5	A	220	239	parallel
Strand 6	A	259	267	parallel
Strand 7	A	284	293	parallel
Strand 8	A	310	315	parallel
Strand 9	A	341	344	parallel

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There are 17 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	174	179	parallel
Strand 3	A	199	216	parallel
Strand 4	A	220	239	parallel
Strand 5	A	259	267	parallel
Strand 6	A	284	293	parallel
Strand 7	A	306	307	parallel
Strand 8	A	335	337	parallel
Strand 9	A	365	369	parallel
Strand 10	A	372	376	anti-parallel
Strand 11	A	383	387	anti-parallel
Strand 12	A	390	393	anti-parallel
Strand 13	C	397	402	parallel
Strand 14	B	412	419	parallel
Strand 15	B	425	432	anti-parallel
Strand 16	B	437	443	anti-parallel
Strand 17	B	448	453	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	279	281	parallel
Strand 3	A	301	303	parallel
Strand 4	A	332	333	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	347	348	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	128	132	parallel
Strand 3	B	159	164	parallel
Strand 4	B	182	191	parallel
Strand 5	B	199	216	parallel
Strand 6	B	220	239	parallel
Strand 7	B	244	248	parallel
Strand 8	B	272	276	parallel
Strand 9	B	297	299	parallel
Strand 10	B	324	326	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	142	144	parallel
Strand 3	B	182	191	parallel
Strand 4	B	199	216	parallel
Strand 5	B	220	239	parallel
Strand 6	B	259	267	parallel
Strand 7	B	284	293	parallel
Strand 8	B	310	315	parallel
Strand 9	B	341	344	parallel

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There are 17 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	174	179	parallel
Strand 3	B	199	216	parallel
Strand 4	B	220	239	parallel
Strand 5	B	259	267	parallel
Strand 6	B	284	293	parallel
Strand 7	B	306	307	parallel
Strand 8	B	335	337	parallel
Strand 9	B	365	369	parallel
Strand 10	B	372	376	anti-parallel
Strand 11	B	383	387	anti-parallel
Strand 12	B	390	393	anti-parallel
Strand 13	A	397	402	parallel
Strand 14	C	412	419	parallel
Strand 15	C	425	432	anti-parallel
Strand 16	C	437	443	anti-parallel
Strand 17	C	448	453	anti-parallel

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There are 17 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	453	first strand
Strand 2	A	437	443	anti-parallel
Strand 3	A	425	432	anti-parallel
Strand 4	A	412	419	anti-parallel
Strand 5	B	397	402	parallel
Strand 6	C	390	393	parallel
Strand 7	C	383	387	anti-parallel
Strand 8	C	372	376	anti-parallel
Strand 9	C	365	369	anti-parallel
Strand 10	C	335	337	parallel
Strand 11	C	306	307	parallel
Strand 12	C	284	293	parallel
Strand 13	C	259	267	parallel
Strand 14	C	220	239	parallel
Strand 15	C	199	216	parallel
Strand 16	C	174	179	parallel
Strand 17	C	136	137	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	128	132	parallel
Strand 3	C	159	164	parallel
Strand 4	C	182	191	parallel
Strand 5	C	199	216	parallel
Strand 6	C	220	239	parallel
Strand 7	C	244	248	parallel
Strand 8	C	272	276	parallel
Strand 9	C	297	299	parallel
Strand 10	C	324	326	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	142	144	parallel
Strand 3	C	182	191	parallel
Strand 4	C	199	216	parallel
Strand 5	C	220	239	parallel
Strand 6	C	259	267	parallel
Strand 7	C	284	293	parallel
Strand 8	C	310	315	parallel
Strand 9	C	341	344	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	461	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	500	502	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	473	479	anti-parallel
Strand 3	A	482	487	anti-parallel
Strand 4	A	539	545	anti-parallel
Strand 5	A	518	524	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	536	537	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	64	66	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	279	281	parallel
Strand 3	B	301	303	parallel
Strand 4	B	332	333	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	347	348	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	461	first strand
Strand 2	B	554	561	anti-parallel
Strand 3	B	500	502	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	461	first strand
Strand 2	B	554	561	anti-parallel
Strand 3	B	506	507	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	473	479	anti-parallel
Strand 3	B	482	487	anti-parallel
Strand 4	B	539	545	anti-parallel
Strand 5	B	518	524	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	536	537	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	64	66	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	279	281	parallel
Strand 3	C	301	303	parallel
Strand 4	C	332	333	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	347	348	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	461	first strand
Strand 2	C	554	561	anti-parallel
Strand 3	C	500	502	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	461	first strand
Strand 2	C	554	561	anti-parallel
Strand 3	C	506	507	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	470	first strand
Strand 2	C	473	479	anti-parallel
Strand 3	C	482	487	anti-parallel
Strand 4	C	539	545	anti-parallel
Strand 5	C	518	524	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	496	first strand
Strand 2	C	536	537	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JS4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JS4