Analysis of interatomic Contacts of Structural Units in PDB entry:
5JS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JS8 entry

There is 1 chain in PDB entry 5JS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 32PHE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5JS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 57Right-handed alpha
Helix 2
AA2
A
62 91Right-handed alpha
Helix 3
AA3
A
99 116Right-handed alpha
Helix 4
AA4
A
120 133Right-handed alpha
Helix 5
AA5
A
135 142Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
158 164Right-handed alpha
Helix 9
AA9
A
170 176Right-handed alpha
Helix 10
AB1
A
204 209Right-handed alpha
Helix 11
AB2
A
210 215Right-handed 310
Helix 12
AB3
A
228 231Right-handed 310
Helix 13
AB4
A
241 255Right-handed alpha
Helix 14
AB5
A
256 261Right-handed 310
Helix 15
AB6
A
270 281Right-handed alpha
Helix 16
AB7
A
282 286Right-handed 310
Helix 17
AB8
A
295 309Right-handed alpha
Helix 18
AB9
A
328 347Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JS8.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
37 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
322 323parallel
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