Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JSA entry

There are 6 chains in PDB entry 5JSA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 227
B	LEU 4	PRO 211
C	ASN 33	ARG 501
D	PHE 522	ASP 653
E	GLN 1	LYS 233
F	ASP 1	ARG 211

There are 22 helices in PDB entry 5JSA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	87	Right-handed 310
Helix 2	AA2	B	79	83	Right-handed 310
Helix 3	AA3	B	121	126	Right-handed alpha
Helix 4	AA4	B	182	189	Right-handed alpha
Helix 5	AA5	C	98	117	Right-handed alpha
Helix 6	AA6	C	122	126	Right-handed 310
Helix 7	AA7	C	332	347	Right-handed alpha
Helix 8	AA8	C	348	350	Right-handed 310
Helix 9	AA9	C	366	371	Right-handed alpha
Helix 10	AB1	C	385	388	Right-handed 310
Helix 11	AB2	C	472	481	Right-handed alpha
Helix 12	AB3	D	536	546	Right-handed alpha
Helix 13	AB4	D	559	585	Right-handed alpha
Helix 14	AB5	D	607	612	Right-handed alpha
Helix 15	AB6	D	616	625	Right-handed alpha
Helix 16	AB7	D	627	637	Right-handed alpha
Helix 17	AB8	D	641	651	Right-handed alpha
Helix 18	AB9	E	90	94	Right-handed 310
Helix 19	AC1	E	175	177	Right-handed 310
Helix 20	AC2	F	79	83	Right-handed 310
Helix 21	AC3	F	121	126	Right-handed alpha
Helix 22	AC4	F	183	188	Right-handed alpha

There are 31 sheets in PDB entry 5JSA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	46	52	anti-parallel
Strand 6	A	56	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	100	102	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	100	first strand
Strand 2	C	322	323	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	170	178	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	217	225	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	102	105	parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	44	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	102	105	parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	95	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	70	75	anti-parallel
Strand 3	B	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	173	181	anti-parallel
Strand 4	B	159	161	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	173	181	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	150	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	203	209	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	496	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	592	598	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	483	488	anti-parallel
Strand 3	C	222	227	anti-parallel
Strand 4	C	241	244	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	235	238	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	168	first strand
Strand 2	C	145	153	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	189	192	anti-parallel
Strand 5	C	172	174	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	430	432	parallel
Strand 3	C	420	421	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	441	453	anti-parallel
Strand 3	C	283	296	anti-parallel
Strand 4	C	327	331	anti-parallel
Strand 5	C	412	417	anti-parallel
Strand 6	C	379	383	anti-parallel
Strand 7	C	372	376	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	273	first strand
Strand 2	C	283	296	anti-parallel
Strand 3	C	441	453	anti-parallel
Strand 4	C	462	467	anti-parallel
Strand 5	C	356	359	parallel
Strand 6	C	391	393	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	313	314	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	126	130	parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	33	40	anti-parallel
Strand 5	E	46	53	anti-parallel
Strand 6	E	56	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	126	130	parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	121	122	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	116	117	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	155	164	anti-parallel
Strand 3	E	195	203	anti-parallel
Strand 4	E	182	189	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	173	first strand
Strand 2	E	214	218	anti-parallel
Strand 3	E	227	229	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	150	first strand
Strand 2	F	192	197	anti-parallel
Strand 3	F	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JSA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSA