Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JSC entry

There are 4 chains in PDB entry 5JSC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	ALA 397
B	GLU 6	ALA 397
C	GLU 6	GLY 398
D	GLU 6	TYR 161

There are 66 helices in PDB entry 5JSC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	19	37	Right-handed alpha
Helix 3	AA3	A	44	59	Right-handed alpha
Helix 4	AA4	A	60	66	Right-handed 310
Helix 5	AA5	A	79	94	Right-handed alpha
Helix 6	AA6	A	94	115	Right-handed alpha
Helix 7	AA7	A	116	129	Right-handed alpha
Helix 8	AA8	A	146	150	Right-handed 310
Helix 9	AA9	A	189	192	Right-handed 310
Helix 10	AB1	A	241	279	Right-handed alpha
Helix 11	AB2	A	289	319	Right-handed alpha
Helix 12	AB3	A	323	350	Right-handed alpha
Helix 13	AB4	A	351	355	Right-handed 310
Helix 14	AB5	A	358	368	Right-handed alpha
Helix 15	AB6	A	369	372	Right-handed 310
Helix 16	AB7	A	376	396	Right-handed alpha
Helix 17	AB8	B	11	15	Right-handed 310
Helix 18	AB9	B	19	37	Right-handed alpha
Helix 19	AC1	B	45	59	Right-handed alpha
Helix 20	AC2	B	60	66	Right-handed 310
Helix 21	AC3	B	79	94	Right-handed alpha
Helix 22	AC4	B	94	115	Right-handed alpha
Helix 23	AC5	B	116	129	Right-handed alpha
Helix 24	AC6	B	146	150	Right-handed 310
Helix 25	AC7	B	189	192	Right-handed 310
Helix 26	AC8	B	241	279	Right-handed alpha
Helix 27	AC9	B	289	319	Right-handed alpha
Helix 28	AD1	B	323	350	Right-handed alpha
Helix 29	AD2	B	351	355	Right-handed 310
Helix 30	AD3	B	358	368	Right-handed alpha
Helix 31	AD4	B	369	372	Right-handed 310
Helix 32	AD5	B	376	397	Right-handed alpha
Helix 33	AD6	C	11	15	Right-handed 310
Helix 34	AD7	C	19	37	Right-handed alpha
Helix 35	AD8	C	44	59	Right-handed alpha
Helix 36	AD9	C	60	66	Right-handed 310
Helix 37	AE1	C	68	72	Right-handed 310
Helix 38	AE2	C	79	94	Right-handed alpha
Helix 39	AE3	C	94	115	Right-handed alpha
Helix 40	AE4	C	116	129	Right-handed alpha
Helix 41	AE5	C	146	150	Right-handed 310
Helix 42	AE6	C	189	192	Right-handed 310
Helix 43	AE7	C	241	279	Right-handed alpha
Helix 44	AE8	C	289	318	Right-handed alpha
Helix 45	AE9	C	323	349	Right-handed alpha
Helix 46	AF1	C	350	355	Right-handed 310
Helix 47	AF2	C	358	368	Right-handed alpha
Helix 48	AF3	C	369	372	Right-handed 310
Helix 49	AF4	C	376	398	Right-handed alpha
Helix 50	AF5	D	11	15	Right-handed 310
Helix 51	AF6	D	19	37	Right-handed alpha
Helix 52	AF7	D	45	59	Right-handed alpha
Helix 53	AF8	D	60	66	Right-handed 310
Helix 54	AF9	D	68	72	Right-handed 310
Helix 55	AG1	D	79	94	Right-handed alpha
Helix 56	AG2	D	94	115	Right-handed alpha
Helix 57	AG3	D	116	129	Right-handed alpha
Helix 58	AG4	D	146	150	Right-handed 310
Helix 59	AG5	D	189	192	Right-handed 310
Helix 60	AG6	D	241	279	Right-handed alpha
Helix 61	AG7	D	289	318	Right-handed alpha
Helix 62	AG8	D	323	349	Right-handed alpha
Helix 63	AG9	D	350	355	Right-handed 310
Helix 64	AH1	D	358	368	Right-handed alpha
Helix 65	AH2	D	369	372	Right-handed 310
Helix 66	AH3	D	376	398	Right-handed alpha

There are 12 sheets in PDB entry 5JSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	178	184	parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	235	236	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	160	171	anti-parallel
Strand 3	A	220	231	anti-parallel
Strand 4	A	206	211	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	284	285	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	178	184	parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	235	236	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	160	171	anti-parallel
Strand 3	B	220	231	anti-parallel
Strand 4	B	206	211	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	284	285	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	178	184	parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	235	236	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	157	first strand
Strand 2	C	160	171	anti-parallel
Strand 3	C	220	231	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	284	285	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	178	184	parallel
Strand 3	D	194	200	anti-parallel
Strand 4	D	235	236	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	157	first strand
Strand 2	D	160	171	anti-parallel
Strand 3	D	220	231	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	284	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JSC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSC