Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JSM entry

There are 4 chains in PDB entry 5JSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 445	LEU 721
B	GLY 444	LEU 721
C	SER 445	SER 722
D	GLY 444	LEU 721

There are 51 helices in PDB entry 5JSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	491	508	Right-handed alpha
Helix 2	AA2	A	536	543	Right-handed alpha
Helix 3	AA3	A	549	570	Right-handed alpha
Helix 4	AA4	A	578	580	Right-handed 310
Helix 5	AA5	A	614	620	Right-handed 310
Helix 6	AA6	A	621	627	Right-handed alpha
Helix 7	AA7	A	634	652	Right-handed alpha
Helix 8	AA8	A	661	671	Right-handed alpha
Helix 9	AA9	A	677	681	Right-handed 310
Helix 10	AB1	A	686	697	Right-handed alpha
Helix 11	AB2	A	700	704	Right-handed 310
Helix 12	AB3	A	706	720	Right-handed alpha
Helix 13	AB4	B	446	451	Right-handed 310
Helix 14	AB5	B	491	508	Right-handed alpha
Helix 15	AB6	B	536	543	Right-handed alpha
Helix 16	AB7	B	549	570	Right-handed alpha
Helix 17	AB8	B	578	580	Right-handed 310
Helix 18	AB9	B	597	602	Right-handed alpha
Helix 19	AC1	B	603	603	Right-handed 310
Helix 20	AC2	B	616	620	Right-handed 310
Helix 21	AC3	B	621	626	Right-handed alpha
Helix 22	AC4	B	634	652	Right-handed alpha
Helix 23	AC5	B	661	672	Right-handed alpha
Helix 24	AC6	B	677	681	Right-handed 310
Helix 25	AC7	B	686	697	Right-handed alpha
Helix 26	AC8	B	700	704	Right-handed 310
Helix 27	AC9	B	706	720	Right-handed alpha
Helix 28	AD1	C	491	508	Right-handed alpha
Helix 29	AD2	C	536	543	Right-handed alpha
Helix 30	AD3	C	549	570	Right-handed alpha
Helix 31	AD4	C	578	580	Right-handed 310
Helix 32	AD5	C	621	626	Right-handed alpha
Helix 33	AD6	C	634	652	Right-handed alpha
Helix 34	AD7	C	664	671	Right-handed alpha
Helix 35	AD8	C	677	681	Right-handed 310
Helix 36	AD9	C	686	697	Right-handed alpha
Helix 37	AE1	C	700	704	Right-handed 310
Helix 38	AE2	C	706	720	Right-handed alpha
Helix 39	AE3	D	446	451	Right-handed 310
Helix 40	AE4	D	491	508	Right-handed alpha
Helix 41	AE5	D	536	543	Right-handed alpha
Helix 42	AE6	D	549	570	Right-handed alpha
Helix 43	AE7	D	578	580	Right-handed 310
Helix 44	AE8	D	616	620	Right-handed 310
Helix 45	AE9	D	621	626	Right-handed alpha
Helix 46	AF1	D	634	652	Right-handed alpha
Helix 47	AF2	D	664	672	Right-handed alpha
Helix 48	AF3	D	677	681	Right-handed 310
Helix 49	AF4	D	686	697	Right-handed alpha
Helix 50	AF5	D	700	704	Right-handed 310
Helix 51	AF6	D	706	720	Right-handed alpha

There are 8 sheets in PDB entry 5JSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	466	first strand
Strand 2	A	469	475	anti-parallel
Strand 3	A	479	485	anti-parallel
Strand 4	A	526	530	anti-parallel
Strand 5	A	516	520	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	584	first strand
Strand 2	A	590	592	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	466	first strand
Strand 2	B	469	475	anti-parallel
Strand 3	B	479	485	anti-parallel
Strand 4	B	526	530	anti-parallel
Strand 5	B	516	520	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	584	first strand
Strand 2	B	590	592	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	466	first strand
Strand 2	C	469	475	anti-parallel
Strand 3	C	479	485	anti-parallel
Strand 4	C	526	530	anti-parallel
Strand 5	C	516	520	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	582	584	first strand
Strand 2	C	590	592	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	466	first strand
Strand 2	D	469	475	anti-parallel
Strand 3	D	479	485	anti-parallel
Strand 4	D	526	530	anti-parallel
Strand 5	D	516	520	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	582	584	first strand
Strand 2	D	590	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSM