Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JSZ entry

There are 6 chains in PDB entry 5JSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 280
B	MET 1	LYS 282
C	SER 9	SER 173
D	ILE 6	LYS 264
E	GLY 1	SER 280
F	MET 1	ALA 20

There are 96 helices in PDB entry 5JSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	47	Right-handed 310
Helix 2	AA2	A	48	54	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	101	106	Right-handed alpha
Helix 5	AA5	A	107	113	Right-handed alpha
Helix 6	AA6	A	116	131	Right-handed alpha
Helix 7	AA7	A	140	144	Right-handed 310
Helix 8	AA8	A	148	159	Right-handed alpha
Helix 9	AA9	A	175	194	Right-handed alpha
Helix 10	AB1	A	203	209	Right-handed alpha
Helix 11	AB2	A	226	231	Right-handed alpha
Helix 12	AB3	A	233	239	Right-handed alpha
Helix 13	AB4	A	245	257	Right-handed alpha
Helix 14	AB5	A	267	279	Right-handed alpha
Helix 15	AB6	B	45	53	Right-handed alpha
Helix 16	AB7	B	79	86	Right-handed alpha
Helix 17	AB8	B	93	97	Right-handed 310
Helix 18	AB9	B	102	109	Right-handed alpha
Helix 19	AC1	B	118	132	Right-handed alpha
Helix 20	AC2	B	135	139	Right-handed 310
Helix 21	AC3	B	142	146	Right-handed 310
Helix 22	AC4	B	147	161	Right-handed alpha
Helix 23	AC5	B	177	194	Right-handed alpha
Helix 24	AC6	B	205	212	Right-handed alpha
Helix 25	AC7	B	228	234	Right-handed alpha
Helix 26	AC8	B	236	242	Right-handed alpha
Helix 27	AC9	B	247	260	Right-handed alpha
Helix 28	AD1	B	269	282	Right-handed alpha
Helix 29	AD2	C	14	32	Right-handed alpha
Helix 30	AD3	C	44	56	Right-handed alpha
Helix 31	AD4	C	56	76	Right-handed alpha
Helix 32	AD5	C	82	101	Right-handed alpha
Helix 33	AD6	C	106	121	Right-handed alpha
Helix 34	AD7	C	123	132	Right-handed alpha
Helix 35	AD8	C	137	152	Right-handed alpha
Helix 36	AD9	C	152	171	Right-handed alpha
Helix 37	AE1	D	20	36	Right-handed alpha
Helix 38	AE2	D	40	58	Right-handed alpha
Helix 39	AE3	D	61	64	Right-handed 310
Helix 40	AE4	D	65	70	Right-handed alpha
Helix 41	AE5	D	72	85	Right-handed alpha
Helix 42	AE6	D	102	118	Right-handed alpha
Helix 43	AE7	D	118	129	Right-handed alpha
Helix 44	AE8	D	131	144	Right-handed alpha
Helix 45	AE9	D	145	149	Right-handed 310
Helix 46	AF1	D	153	185	Right-handed alpha
Helix 47	AF2	D	192	197	Right-handed alpha
Helix 48	AF3	D	200	225	Right-handed alpha
Helix 49	AF4	D	245	264	Right-handed alpha
Helix 50	AF5	E	45	47	Right-handed 310
Helix 51	AF6	E	48	54	Right-handed alpha
Helix 52	AF7	E	77	83	Right-handed alpha
Helix 53	AF8	E	101	106	Right-handed alpha
Helix 54	AF9	E	107	113	Right-handed alpha
Helix 55	AG1	E	116	131	Right-handed alpha
Helix 56	AG2	E	140	144	Right-handed 310
Helix 57	AG3	E	148	159	Right-handed alpha
Helix 58	AG4	E	175	194	Right-handed alpha
Helix 59	AG5	E	204	209	Right-handed alpha
Helix 60	AG6	E	226	231	Right-handed alpha
Helix 61	AG7	E	234	239	Right-handed alpha
Helix 62	AG8	E	245	257	Right-handed alpha
Helix 63	AG9	E	267	279	Right-handed alpha
Helix 64	AH1	F	45	53	Right-handed alpha
Helix 65	AH2	F	79	86	Right-handed alpha
Helix 66	AH3	F	93	97	Right-handed 310
Helix 67	AH4	F	102	109	Right-handed alpha
Helix 68	AH5	F	118	132	Right-handed alpha
Helix 69	AH6	F	135	139	Right-handed 310
Helix 70	AH7	F	142	146	Right-handed 310
Helix 71	AH8	F	147	161	Right-handed alpha
Helix 72	AH9	F	177	194	Right-handed alpha
Helix 73	AI1	F	205	212	Right-handed alpha
Helix 74	AI2	F	228	234	Right-handed alpha
Helix 75	AI3	F	235	242	Right-handed alpha
Helix 76	AI4	F	247	259	Right-handed alpha
Helix 77	AI5	F	269	282	Right-handed alpha
Helix 78	AI6	G	15	32	Right-handed alpha
Helix 79	AI7	G	44	53	Right-handed alpha
Helix 80	AI8	G	56	75	Right-handed alpha
Helix 81	AI9	G	84	101	Right-handed alpha
Helix 82	AJ1	G	106	132	Right-handed alpha
Helix 83	AJ2	G	137	152	Right-handed alpha
Helix 84	AJ3	G	152	173	Right-handed alpha
Helix 85	AJ4	H	20	36	Right-handed alpha
Helix 86	AJ5	H	40	58	Right-handed alpha
Helix 87	AJ6	H	61	64	Right-handed 310
Helix 88	AJ7	H	65	85	Right-handed alpha
Helix 89	AJ8	H	102	118	Right-handed alpha
Helix 90	AJ9	H	118	129	Right-handed alpha
Helix 91	AK1	H	131	144	Right-handed alpha
Helix 92	AK2	H	145	149	Right-handed 310
Helix 93	AK3	H	152	185	Right-handed alpha
Helix 94	AK4	H	192	197	Right-handed alpha
Helix 95	AK5	H	200	225	Right-handed alpha
Helix 96	AK6	H	245	264	Right-handed alpha

There are 8 sheets in PDB entry 5JSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	67	69	anti-parallel
Strand 4	A	72	74	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	164	167	parallel
Strand 3	A	196	200	parallel
Strand 4	A	35	39	parallel
Strand 5	A	212	215	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	3	6	anti-parallel
Strand 3	B	63	65	anti-parallel
Strand 4	B	70	71	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	166	170	parallel
Strand 3	B	197	201	parallel
Strand 4	B	35	40	parallel
Strand 5	B	214	219	parallel
Strand 6	B	222	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	67	69	anti-parallel
Strand 4	E	72	74	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	164	168	parallel
Strand 3	E	196	200	parallel
Strand 4	E	35	39	parallel
Strand 5	E	212	215	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	30	first strand
Strand 2	F	3	6	anti-parallel
Strand 3	F	63	65	anti-parallel
Strand 4	F	70	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	90	first strand
Strand 2	F	166	170	parallel
Strand 3	F	197	201	parallel
Strand 4	F	35	40	parallel
Strand 5	F	214	219	parallel
Strand 6	F	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JSZ