Analysis of interatomic Contacts of Structural Units in PDB entry:
5JT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JT8 entry

There are 4 chains in PDB entry 5JT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6SER 118
A
 TRP 120LEU 315
B
 ARG 4SER 118
B
 TRP 120LEU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5JT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
23 45Right-handed alpha
Helix 3
AA3
A
46 50Right-handed 310
Helix 4
AA4
A
61 71Right-handed alpha
Helix 5
AA5
A
75 83Right-handed alpha
Helix 6
AA6
A
101 105Right-handed alpha
Helix 7
AA7
A
118 137Right-handed alpha
Helix 8
AA8
A
143 151Right-handed alpha
Helix 9
AA9
A
168 179Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
218 230Right-handed alpha
Helix 12
AB3
A
240 245Right-handed alpha
Helix 13
AB4
A
302 306Right-handed 310
Helix 14
AB5
B
9 17Right-handed alpha
Helix 15
AB6
B
23 45Right-handed alpha
Helix 16
AB7
B
46 50Right-handed 310
Helix 17
AB8
B
61 71Right-handed alpha
Helix 18
AB9
B
75 83Right-handed alpha
Helix 19
AC1
B
101 105Right-handed alpha
Helix 20
AC2
B
118 137Right-handed alpha
Helix 21
AC3
B
143 151Right-handed alpha
Helix 22
AC4
B
168 179Right-handed alpha
Helix 23
AC5
B
183 187Right-handed 310
Helix 24
AC6
B
218 230Right-handed alpha
Helix 25
AC7
B
240 246Right-handed alpha
Helix 26
AC8
B
302 306Right-handed 310
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There are 6 sheets in PDB entry 5JT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
232 236anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
294 298anti-parallel
Strand 5
A
250 251parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
311 314anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
263 273anti-parallel
Strand 3
B
232 236anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
263 273anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
294 298anti-parallel
Strand 5
B
250 251parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 212first strand
Strand 2
B
311 314anti-parallel
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