Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JTF entry

There are 2 chains in PDB entry 5JTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4LEU 179
B
 GLY 4LEU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
39 51Right-handed alpha
Helix 3
AA3
A
77 81Right-handed 310
Helix 4
AA4
A
98 113Right-handed alpha
Helix 5
AA5
A
127 138Right-handed alpha
Helix 6
AA6
B
11 13Right-handed 310
Helix 7
AA7
B
14 29Right-handed alpha
Helix 8
AA8
B
39 52Right-handed alpha
Helix 9
AA9
B
77 81Right-handed 310
Helix 10
AB1
B
92 95Right-handed 310
Helix 11
AB2
B
98 115Right-handed alpha
Helix 12
AB3
B
127 136Right-handed alpha
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There are 2 sheets in PDB entry 5JTF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
56 60anti-parallel
Strand 3
A
65 73anti-parallel
Strand 4
A
83 90anti-parallel
Strand 5
A
118 125parallel
Strand 6
A
155 164anti-parallel
Strand 7
A
140 150anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
64 73anti-parallel
Strand 4
B
83 90anti-parallel
Strand 5
B
118 124parallel
Strand 6
B
155 164anti-parallel
Strand 7
B
140 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il