Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JTG entry

There are 4 chains in PDB entry 5JTG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	LYS 349
B	GLY 15	LYS 349
C	LEU 17	LYS 349
D	PRO 13	TYR 250

There are 54 helices in PDB entry 5JTG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	56	Right-handed 310
Helix 2	AA2	A	69	80	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed alpha
Helix 4	AA4	A	147	156	Right-handed alpha
Helix 5	AA5	A	165	202	Right-handed alpha
Helix 6	AA6	A	204	237	Right-handed alpha
Helix 7	AA7	A	243	274	Right-handed alpha
Helix 8	AA8	A	274	301	Right-handed alpha
Helix 9	AA9	A	302	308	Right-handed alpha
Helix 10	AB1	A	329	337	Right-handed alpha
Helix 11	AB2	A	338	343	Right-handed alpha
Helix 12	AB3	B	46	56	Right-handed 310
Helix 13	AB4	B	69	80	Right-handed alpha
Helix 14	AB5	B	83	92	Right-handed alpha
Helix 15	AB6	B	147	156	Right-handed alpha
Helix 16	AB7	B	165	202	Right-handed alpha
Helix 17	AB8	B	204	237	Right-handed alpha
Helix 18	AB9	B	243	274	Right-handed alpha
Helix 19	AC1	B	274	301	Right-handed alpha
Helix 20	AC2	B	302	308	Right-handed alpha
Helix 21	AC3	B	329	337	Right-handed alpha
Helix 22	AC4	B	338	343	Right-handed alpha
Helix 23	AC5	C	46	56	Right-handed 310
Helix 24	AC6	C	69	81	Right-handed alpha
Helix 25	AC7	C	83	92	Right-handed alpha
Helix 26	AC8	C	147	156	Right-handed alpha
Helix 27	AC9	C	165	202	Right-handed alpha
Helix 28	AD1	C	205	237	Right-handed alpha
Helix 29	AD2	C	243	274	Right-handed alpha
Helix 30	AD3	C	274	301	Right-handed alpha
Helix 31	AD4	C	302	308	Right-handed alpha
Helix 32	AD5	C	327	337	Right-handed alpha
Helix 33	AD6	C	338	343	Right-handed alpha
Helix 34	AD7	D	46	56	Right-handed 310
Helix 35	AD8	D	69	80	Right-handed alpha
Helix 36	AD9	D	83	92	Right-handed alpha
Helix 37	AE1	D	147	156	Right-handed alpha
Helix 38	AE2	D	165	202	Right-handed alpha
Helix 39	AE3	D	204	237	Right-handed alpha
Helix 40	AE4	D	243	301	Right-handed alpha
Helix 41	AE5	D	302	308	Right-handed alpha
Helix 42	AE6	D	329	337	Right-handed alpha
Helix 43	AE7	D	338	343	Right-handed alpha
Helix 44	AE8	E	46	56	Right-handed 310
Helix 45	AE9	E	69	80	Right-handed alpha
Helix 46	AF1	E	83	92	Right-handed alpha
Helix 47	AF2	E	147	156	Right-handed alpha
Helix 48	AF3	E	165	202	Right-handed alpha
Helix 49	AF4	E	204	237	Right-handed alpha
Helix 50	AF5	E	243	274	Right-handed alpha
Helix 51	AF6	E	274	301	Right-handed alpha
Helix 52	AF7	E	302	308	Right-handed alpha
Helix 53	AF8	E	329	337	Right-handed alpha
Helix 54	AF9	E	338	343	Right-handed alpha

There are 5 sheets in PDB entry 5JTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	135	140	parallel
Strand 5	A	121	132	anti-parallel
Strand 6	A	106	116	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	121	132	anti-parallel
Strand 6	B	106	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	140	parallel
Strand 5	C	121	132	anti-parallel
Strand 6	C	106	116	anti-parallel
Strand 7	C	98	101	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	140	parallel
Strand 5	D	121	132	anti-parallel
Strand 6	D	106	116	anti-parallel
Strand 7	D	98	101	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	34	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	121	132	anti-parallel
Strand 6	E	105	116	anti-parallel
Strand 7	E	98	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JTG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTG