Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JTW entry

There are 3 chains in PDB entry 5JTW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	PRO 670
B	ALA 757	ALA 1413
C	SER 1464	GLY 1476

There are 58 helices in PDB entry 5JTW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	99	102	Right-handed 310
Helix 3	AA3	A	115	120	Right-handed alpha
Helix 4	AA4	A	315	326	Right-handed alpha
Helix 5	AA5	A	329	333	Right-handed 310
Helix 6	AA6	A	606	612	Right-handed alpha
Helix 7	AA7	A	620	629	Right-handed alpha
Helix 8	AA8	A	630	632	Right-handed 310
Helix 9	AA9	A	642	651	Right-handed alpha
Helix 10	AB1	B	879	881	Right-handed 310
Helix 11	AB2	B	999	1003	Right-handed 310
Helix 12	AB3	B	1010	1032	Right-handed alpha
Helix 13	AB4	B	1033	1037	Right-handed 310
Helix 14	AB5	B	1038	1039	Right-handed 310
Helix 15	AB6	B	1040	1057	Right-handed alpha
Helix 16	AB7	B	1075	1093	Right-handed alpha
Helix 17	AB8	B	1096	1109	Right-handed alpha
Helix 18	AB9	B	1136	1154	Right-handed alpha
Helix 19	AC1	B	1157	1186	Right-handed alpha
Helix 20	AC2	B	1189	1203	Right-handed alpha
Helix 21	AC3	B	1206	1221	Right-handed alpha
Helix 22	AC4	B	1258	1276	Right-handed alpha
Helix 23	AC5	B	1279	1294	Right-handed alpha
Helix 24	AC6	B	1295	1298	Right-handed 310
Helix 25	AC7	B	1302	1322	Right-handed alpha
Helix 26	AC8	C	1497	1507	Right-handed alpha
Helix 27	AC9	C	1612	1619	Right-handed alpha
Helix 28	AD1	C	1715	1720	Right-handed alpha
Helix 29	AD2	C	1721	1724	Right-handed 310
Helix 30	AD3	C	1725	1741	Right-handed alpha
Helix 31	AD4	D	90	97	Right-handed alpha
Helix 32	AD5	D	115	120	Right-handed alpha
Helix 33	AD6	D	315	327	Right-handed alpha
Helix 34	AD7	D	329	333	Right-handed 310
Helix 35	AD8	D	534	538	Right-handed 310
Helix 36	AD9	D	606	612	Right-handed alpha
Helix 37	AE1	D	620	629	Right-handed alpha
Helix 38	AE2	D	630	632	Right-handed 310
Helix 39	AE3	D	642	651	Right-handed alpha
Helix 40	AE4	E	996	1002	Right-handed alpha
Helix 41	AE5	E	1010	1032	Right-handed alpha
Helix 42	AE6	E	1033	1038	Right-handed 310
Helix 43	AE7	E	1039	1058	Right-handed alpha
Helix 44	AE8	E	1075	1093	Right-handed alpha
Helix 45	AE9	E	1096	1109	Right-handed alpha
Helix 46	AF1	E	1125	1130	Right-handed 310
Helix 47	AF2	E	1136	1156	Right-handed alpha
Helix 48	AF3	E	1161	1186	Right-handed alpha
Helix 49	AF4	E	1189	1203	Right-handed alpha
Helix 50	AF5	E	1206	1219	Right-handed alpha
Helix 51	AF6	E	1258	1276	Right-handed alpha
Helix 52	AF7	E	1279	1295	Right-handed alpha
Helix 53	AF8	E	1301	1321	Right-handed alpha
Helix 54	AF9	E	1347	1352	Right-handed 310
Helix 55	AG1	F	1497	1506	Right-handed alpha
Helix 56	AG2	F	1611	1619	Right-handed alpha
Helix 57	AG3	F	1714	1718	Right-handed 310
Helix 58	AG4	F	1725	1741	Right-handed alpha

There are 50 sheets in PDB entry 5JTW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	655	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	37	44	anti-parallel
Strand 4	A	82	87	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	127	135	parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	51	59	anti-parallel
Strand 5	A	72	77	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	155	163	anti-parallel
Strand 3	A	197	203	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	233	first strand
Strand 2	A	211	219	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	185	191	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	247	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	309	314	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	361	363	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	278	287	anti-parallel
Strand 3	A	337	346	anti-parallel
Strand 4	A	352	357	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	293	295	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	383	392	anti-parallel
Strand 3	A	430	436	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	424	first strand
Strand 2	A	402	409	anti-parallel
Strand 3	A	443	450	anti-parallel
Strand 4	A	456	463	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	477	first strand
Strand 2	A	488	496	anti-parallel
Strand 3	A	528	532	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	561	first strand
Strand 2	A	540	549	anti-parallel
Strand 3	A	504	511	anti-parallel
Strand 4	A	514	522	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	575	first strand
Strand 2	A	589	593	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	808	first strand
Strand 2	B	825	828	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	814	first strand
Strand 2	B	818	821	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	836	first strand
Strand 2	B	854	857	anti-parallel
Strand 3	B	893	896	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	848	851	first strand
Strand 2	B	899	903	anti-parallel
Strand 3	B	875	877	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	889	first strand
Strand 2	B	863	869	anti-parallel
Strand 3	B	908	917	anti-parallel
Strand 4	B	924	932	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	938	948	first strand
Strand 2	B	1376	1386	anti-parallel
Strand 3	B	974	982	anti-parallel
Strand 4	B	1356	1359	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	961	first strand
Strand 2	B	1365	1372	anti-parallel
Strand 3	B	1327	1335	anti-parallel
Strand 4	B	1338	1345	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1465	1472	first strand
Strand 2	C	1534	1542	anti-parallel
Strand 3	C	1494	1496	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1565	1570	first strand
Strand 2	C	1552	1558	anti-parallel
Strand 3	C	1484	1489	anti-parallel
Strand 4	C	1521	1526	anti-parallel
Strand 5	C	1512	1518	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1581	1584	first strand
Strand 2	C	1587	1590	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1708	1711	first strand
Strand 2	C	1682	1687	anti-parallel
Strand 3	C	1625	1630	anti-parallel
Strand 4	C	1649	1652	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1664	1670	first strand
Strand 2	C	1640	1647	anti-parallel
Strand 3	C	1629	1637	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	655	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	37	44	anti-parallel
Strand 4	D	82	87	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	127	135	parallel
Strand 3	D	107	113	anti-parallel
Strand 4	D	51	59	anti-parallel
Strand 5	D	72	77	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	145	first strand
Strand 2	D	155	163	anti-parallel
Strand 3	D	197	203	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	233	first strand
Strand 2	D	211	219	anti-parallel
Strand 3	D	174	179	anti-parallel
Strand 4	D	185	191	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	247	first strand
Strand 2	D	262	270	anti-parallel
Strand 3	D	309	314	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	304	first strand
Strand 2	D	278	287	anti-parallel
Strand 3	D	337	346	anti-parallel
Strand 4	D	352	357	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	293	295	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	370	first strand
Strand 2	D	384	392	anti-parallel
Strand 3	D	430	435	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	424	first strand
Strand 2	D	402	411	anti-parallel
Strand 3	D	441	450	anti-parallel
Strand 4	D	456	463	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	477	first strand
Strand 2	D	488	496	anti-parallel
Strand 3	D	527	532	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	561	first strand
Strand 2	D	540	549	anti-parallel
Strand 3	D	504	511	anti-parallel
Strand 4	D	514	522	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	575	first strand
Strand 2	D	589	593	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	805	808	first strand
Strand 2	E	825	828	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	811	814	first strand
Strand 2	E	818	821	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	833	836	first strand
Strand 2	E	854	857	anti-parallel
Strand 3	E	893	896	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	848	851	first strand
Strand 2	E	899	903	anti-parallel
Strand 3	E	875	877	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	885	889	first strand
Strand 2	E	863	869	anti-parallel
Strand 3	E	908	917	anti-parallel
Strand 4	E	924	932	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	938	949	first strand
Strand 2	E	1375	1386	anti-parallel
Strand 3	E	974	982	anti-parallel
Strand 4	E	1355	1360	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	958	961	first strand
Strand 2	E	1365	1370	anti-parallel
Strand 3	E	1327	1334	anti-parallel
Strand 4	E	1340	1346	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1222	1224	first strand
Strand 2	E	1228	1230	anti-parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1465	1471	first strand
Strand 2	F	1535	1542	anti-parallel
Strand 3	F	1494	1496	anti-parallel

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There are 5 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1561	1570	first strand
Strand 2	F	1552	1558	anti-parallel
Strand 3	F	1484	1489	anti-parallel
Strand 4	F	1521	1526	anti-parallel
Strand 5	F	1512	1518	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1581	1584	first strand
Strand 2	F	1587	1590	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1708	1711	first strand
Strand 2	F	1682	1687	anti-parallel
Strand 3	F	1625	1630	anti-parallel
Strand 4	F	1649	1652	anti-parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1664	1670	first strand
Strand 2	F	1640	1647	anti-parallel
Strand 3	F	1629	1637	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JTW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JTW