Analysis of interatomic Contacts of Structural Units in PDB entry:
5JU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JU6 entry

There are 4 chains in PDB entry 5JU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 21	PRO 855
B	ASN 21	PRO 855
C	ASN 21	PRO 855
D	ASN 21	PRO 855

There are122 helices in PDB entry 5JU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	39	Right-handed 310
Helix 2	AA2	A	40	52	Right-handed alpha
Helix 3	AA3	A	55	64	Right-handed alpha
Helix 4	AA4	A	80	84	Right-handed 310
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	117	135	Right-handed alpha
Helix 7	AA7	A	156	160	Right-handed 310
Helix 8	AA8	A	164	182	Right-handed alpha
Helix 9	AA9	A	218	225	Right-handed alpha
Helix 10	AB1	A	227	236	Right-handed alpha
Helix 11	AB2	A	256	261	Right-handed alpha
Helix 12	AB3	A	284	290	Right-handed alpha
Helix 13	AB4	A	310	319	Right-handed alpha
Helix 14	AB5	A	323	341	Right-handed alpha
Helix 15	AB6	A	365	368	Right-handed 310
Helix 16	AB7	A	384	395	Right-handed alpha
Helix 17	AB8	A	419	422	Right-handed 310
Helix 18	AB9	A	431	435	Right-handed 310
Helix 19	AC1	A	457	469	Right-handed alpha
Helix 20	AC2	A	481	492	Right-handed alpha
Helix 21	AC3	A	525	537	Right-handed alpha
Helix 22	AC4	A	570	572	Right-handed 310
Helix 23	AC5	A	573	583	Right-handed alpha
Helix 24	AC6	A	598	603	Right-handed 310
Helix 25	AC7	A	627	635	Right-handed alpha
Helix 26	AC8	A	685	690	Right-handed 310
Helix 27	AC9	A	710	716	Right-handed alpha
Helix 28	AD1	A	723	727	Right-handed 310
Helix 29	AD2	A	750	754	Right-handed 310
Helix 30	AD3	A	815	818	Right-handed 310
Helix 31	AD4	B	37	39	Right-handed 310
Helix 32	AD5	B	40	52	Right-handed alpha
Helix 33	AD6	B	55	64	Right-handed alpha
Helix 34	AD7	B	80	84	Right-handed 310
Helix 35	AD8	B	108	116	Right-handed alpha
Helix 36	AD9	B	117	136	Right-handed alpha
Helix 37	AE1	B	156	160	Right-handed 310
Helix 38	AE2	B	164	182	Right-handed alpha
Helix 39	AE3	B	218	225	Right-handed alpha
Helix 40	AE4	B	227	236	Right-handed alpha
Helix 41	AE5	B	256	261	Right-handed alpha
Helix 42	AE6	B	284	291	Right-handed alpha
Helix 43	AE7	B	310	319	Right-handed alpha
Helix 44	AE8	B	323	341	Right-handed alpha
Helix 45	AE9	B	342	347	Right-handed alpha
Helix 46	AF1	B	365	368	Right-handed 310
Helix 47	AF2	B	384	396	Right-handed alpha
Helix 48	AF3	B	419	422	Right-handed 310
Helix 49	AF4	B	431	435	Right-handed 310
Helix 50	AF5	B	457	469	Right-handed alpha
Helix 51	AF6	B	481	492	Right-handed alpha
Helix 52	AF7	B	525	537	Right-handed alpha
Helix 53	AF8	B	573	583	Right-handed alpha
Helix 54	AF9	B	598	603	Right-handed 310
Helix 55	AG1	B	628	635	Right-handed alpha
Helix 56	AG2	B	685	690	Right-handed 310
Helix 57	AG3	B	710	716	Right-handed alpha
Helix 58	AG4	B	723	727	Right-handed 310
Helix 59	AG5	B	750	754	Right-handed 310
Helix 60	AG6	B	815	818	Right-handed 310
Helix 61	AG7	C	37	39	Right-handed 310
Helix 62	AG8	C	40	53	Right-handed alpha
Helix 63	AG9	C	55	64	Right-handed alpha
Helix 64	AH1	C	80	84	Right-handed 310
Helix 65	AH2	C	108	116	Right-handed alpha
Helix 66	AH3	C	117	136	Right-handed alpha
Helix 67	AH4	C	156	160	Right-handed 310
Helix 68	AH5	C	164	182	Right-handed alpha
Helix 69	AH6	C	218	225	Right-handed alpha
Helix 70	AH7	C	226	236	Right-handed alpha
Helix 71	AH8	C	256	261	Right-handed alpha
Helix 72	AH9	C	284	291	Right-handed alpha
Helix 73	AI1	C	310	319	Right-handed alpha
Helix 74	AI2	C	323	341	Right-handed alpha
Helix 75	AI3	C	342	347	Right-handed alpha
Helix 76	AI4	C	365	368	Right-handed 310
Helix 77	AI5	C	384	395	Right-handed alpha
Helix 78	AI6	C	419	422	Right-handed 310
Helix 79	AI7	C	431	435	Right-handed 310
Helix 80	AI8	C	457	469	Right-handed alpha
Helix 81	AI9	C	481	492	Right-handed alpha
Helix 82	AJ1	C	525	537	Right-handed alpha
Helix 83	AJ2	C	570	572	Right-handed 310
Helix 84	AJ3	C	573	583	Right-handed alpha
Helix 85	AJ4	C	598	603	Right-handed 310
Helix 86	AJ5	C	628	635	Right-handed alpha
Helix 87	AJ6	C	685	689	Right-handed 310
Helix 88	AJ7	C	710	716	Right-handed alpha
Helix 89	AJ8	C	723	727	Right-handed 310
Helix 90	AJ9	C	750	754	Right-handed 310
Helix 91	AK1	C	815	818	Right-handed 310
Helix 92	AK2	D	37	39	Right-handed 310
Helix 93	AK3	D	40	53	Right-handed alpha
Helix 94	AK4	D	55	64	Right-handed alpha
Helix 95	AK5	D	80	84	Right-handed 310
Helix 96	AK6	D	108	116	Right-handed alpha
Helix 97	AK7	D	117	135	Right-handed alpha
Helix 98	AK8	D	156	160	Right-handed 310
Helix 99	AK9	D	164	182	Right-handed alpha
Helix 100	AL1	D	218	225	Right-handed alpha
Helix 101	AL2	D	227	236	Right-handed alpha
Helix 102	AL3	D	256	261	Right-handed alpha
Helix 103	AL4	D	284	290	Right-handed alpha
Helix 104	AL5	D	310	319	Right-handed alpha
Helix 105	AL6	D	323	341	Right-handed alpha
Helix 106	AL7	D	342	347	Right-handed alpha
Helix 107	AL8	D	365	368	Right-handed 310
Helix 108	AL9	D	384	395	Right-handed alpha
Helix 109	AM1	D	419	422	Right-handed 310
Helix 110	AM2	D	431	435	Right-handed 310
Helix 111	AM3	D	457	469	Right-handed alpha
Helix 112	AM4	D	481	492	Right-handed alpha
Helix 113	AM5	D	525	537	Right-handed alpha
Helix 114	AM6	D	570	572	Right-handed 310
Helix 115	AM7	D	573	583	Right-handed alpha
Helix 116	AM8	D	598	603	Right-handed 310
Helix 117	AM9	D	628	635	Right-handed alpha
Helix 118	AN1	D	685	689	Right-handed 310
Helix 119	AN2	D	710	716	Right-handed alpha
Helix 120	AN3	D	723	727	Right-handed 310
Helix 121	AN4	D	750	754	Right-handed 310
Helix 122	AN5	D	815	818	Right-handed 310

There are 36 sheets in PDB entry 5JU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	89	91	anti-parallel
Strand 3	A	139	140	parallel
Strand 4	A	185	191	parallel
Strand 5	A	240	243	parallel
Strand 6	A	273	276	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	247	248	anti-parallel
Strand 3	A	214	216	parallel
Strand 4	A	618	620	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	369	373	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	401	first strand
Strand 2	A	561	566	anti-parallel
Strand 3	A	540	546	parallel
Strand 4	A	494	501	parallel
Strand 5	A	413	417	parallel
Strand 6	A	472	476	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	513	514	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	661	first strand
Strand 2	A	756	766	anti-parallel
Strand 3	A	805	813	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	774	first strand
Strand 2	A	798	800	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	795	first strand
Strand 2	A	777	781	anti-parallel
Strand 3	A	834	839	anti-parallel
Strand 4	A	847	851	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	821	first strand
Strand 2	A	826	828	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	89	91	anti-parallel
Strand 3	B	139	140	parallel
Strand 4	B	185	191	parallel
Strand 5	B	240	243	parallel
Strand 6	B	273	276	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	247	248	anti-parallel
Strand 3	B	214	216	parallel
Strand 4	B	618	620	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	364	first strand
Strand 2	B	369	373	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	401	first strand
Strand 2	B	561	566	anti-parallel
Strand 3	B	540	546	parallel
Strand 4	B	494	501	parallel
Strand 5	B	413	417	parallel
Strand 6	B	472	476	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	513	514	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	661	first strand
Strand 2	B	756	766	anti-parallel
Strand 3	B	805	813	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	774	first strand
Strand 2	B	798	800	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	791	795	first strand
Strand 2	B	777	781	anti-parallel
Strand 3	B	835	839	anti-parallel
Strand 4	B	847	850	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	819	821	first strand
Strand 2	B	826	828	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	89	91	anti-parallel
Strand 3	C	139	140	parallel
Strand 4	C	185	191	parallel
Strand 5	C	240	243	parallel
Strand 6	C	273	275	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	247	248	anti-parallel
Strand 3	C	214	216	parallel
Strand 4	C	618	620	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	364	first strand
Strand 2	C	369	373	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	401	first strand
Strand 2	C	561	566	anti-parallel
Strand 3	C	540	546	parallel
Strand 4	C	494	501	parallel
Strand 5	C	413	417	parallel
Strand 6	C	472	476	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	510	first strand
Strand 2	C	513	514	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	661	first strand
Strand 2	C	756	766	anti-parallel
Strand 3	C	805	813	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	772	774	first strand
Strand 2	C	798	800	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	791	795	first strand
Strand 2	C	777	781	anti-parallel
Strand 3	C	835	839	anti-parallel
Strand 4	C	847	850	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	819	821	first strand
Strand 2	C	826	828	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	89	91	anti-parallel
Strand 3	D	139	140	parallel
Strand 4	D	185	191	parallel
Strand 5	D	240	243	parallel
Strand 6	D	273	276	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	247	248	anti-parallel
Strand 3	D	214	216	parallel
Strand 4	D	618	620	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	364	first strand
Strand 2	D	369	373	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	401	first strand
Strand 2	D	561	566	anti-parallel
Strand 3	D	540	546	parallel
Strand 4	D	494	501	parallel
Strand 5	D	413	417	parallel
Strand 6	D	472	476	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	510	first strand
Strand 2	D	513	514	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	661	first strand
Strand 2	D	756	766	anti-parallel
Strand 3	D	805	813	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	772	774	first strand
Strand 2	D	798	800	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	791	795	first strand
Strand 2	D	777	781	anti-parallel
Strand 3	D	835	839	anti-parallel
Strand 4	D	847	850	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	819	821	first strand
Strand 2	D	826	828	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JU6