Analysis of interatomic Contacts of Structural Units in PDB entry:
5JUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JUC entry

There is 1 chain in PDB entry 5JUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21ARG 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 39Right-handed alpha
Helix 2
AA2
A
57 66Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
86 94Right-handed alpha
Helix 5
AA5
A
101 105Right-handed alpha
Helix 6
AA6
A
113 125Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
184 190Right-handed alpha
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
200 203Right-handed 310
Helix 11
AB2
A
217 223Right-handed alpha
Helix 12
AB3
A
227 229Right-handed 310
Helix 13
AB4
A
230 244Right-handed alpha
Helix 14
AB5
A
262 281Right-handed alpha
Helix 15
AB6
A
317 322Right-handed 310
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There are 2 sheets in PDB entry 5JUC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
248 252parallel
Strand 3
A
160 164parallel
Strand 4
A
213 216anti-parallel
Strand 5
A
129 132anti-parallel
Strand 6
A
45 51parallel
Strand 7
A
75 80parallel
Strand 8
A
97 100parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
305 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il