Analysis of interatomic Contacts of Structural Units in PDB entry:
5JUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JUI entry

There are 3 chains in PDB entry 5JUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 204SER 379
B
 ASN 205SER 379
C
 ASN 205SER 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5JUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
327 332Right-handed alpha
Helix 2
AA2
B
328 332Right-handed alpha
Helix 3
AA3
C
328 332Right-handed alpha
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There are 8 sheets in PDB entry 5JUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 220first strand
Strand 2
A
225 235anti-parallel
Strand 3
A
240 247anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
302 305anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
375 377anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 220first strand
Strand 2
B
225 235anti-parallel
Strand 3
B
239 247anti-parallel
Strand 4
C
336 344anti-parallel
Strand 5
B
292 296anti-parallel
Strand 6
B
302 305anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 327first strand
Strand 2
B
267 269anti-parallel
Strand 3
C
359 360anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
352 354anti-parallel
Strand 3
C
279 281anti-parallel
Strand 4
B
311 320anti-parallel
Strand 5
C
311 320anti-parallel
Strand 6
B
279 281anti-parallel
Strand 7
C
352 354anti-parallel
Strand 8
C
375 377anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
C
267 269anti-parallel
Strand 3
B
359 360anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 220first strand
Strand 2
C
225 235anti-parallel
Strand 3
C
239 247anti-parallel
Strand 4
B
336 344anti-parallel
Strand 5
C
292 296anti-parallel
Strand 6
C
302 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il