Analysis of interatomic Contacts of Structural Units in PDB entry:
5JUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JUN entry

There is 1 chain in PDB entry 5JUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21MET 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5JUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 106Right-handed alpha
Helix 2
AA2
A
107 113Right-handed alpha
Helix 3
AA3
A
129 141Right-handed alpha
Helix 4
AA4
A
142 149Right-handed alpha
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There are 3 sheets in PDB entry 5JUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
70 77anti-parallel
Strand 5
A
80 88anti-parallel
Strand 6
A
178 181parallel
Strand 7
A
160 163anti-parallel
Strand 8
A
169 170anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
51 58anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
173 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il