Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JVB entry

There are 2 chains in PDB entry 5JVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10VAL 262
B
 ASN 8GLU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5JVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 44Right-handed alpha
Helix 2
AA2
A
54 64Right-handed alpha
Helix 3
AA3
A
73 82Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
159 170Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
217 231Right-handed alpha
Helix 10
AB1
A
233 238Right-handed alpha
Helix 11
AB2
A
239 241Right-handed 310
Helix 12
AB3
A
249 252Right-handed 310
Helix 13
AB4
A
253 262Right-handed alpha
Helix 14
AB5
B
24 44Right-handed alpha
Helix 15
AB6
B
54 64Right-handed alpha
Helix 16
AB7
B
73 84Right-handed alpha
Helix 17
AB8
B
114 119Right-handed alpha
Helix 18
AB9
B
134 144Right-handed alpha
Helix 19
AC1
B
159 169Right-handed alpha
Helix 20
AC2
B
179 188Right-handed alpha
Helix 21
AC3
B
192 194Right-handed 310
Helix 22
AC4
B
217 231Right-handed alpha
Helix 23
AC5
B
233 238Right-handed alpha
Helix 24
AC6
B
249 252Right-handed 310
Helix 25
AC7
B
253 261Right-handed alpha
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There are 6 sheets in PDB entry 5JVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
14 19parallel
Strand 3
A
69 71parallel
Strand 4
A
210 213anti-parallel
Strand 5
A
86 93anti-parallel
Strand 6
A
244 247anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
205 206anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
122 125parallel
Strand 3
A
174 178parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
196 201anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
14 19parallel
Strand 3
B
69 71parallel
Strand 4
B
210 213anti-parallel
Strand 5
B
86 93anti-parallel
Strand 6
B
244 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
205 206anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
122 125parallel
Strand 3
B
174 178parallel
Strand 4
B
102 107anti-parallel
Strand 5
B
196 201anti-parallel
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