Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JVF entry

There is 1 chain in PDB entry 5JVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7HIS 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5JVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
48 59Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
103 119Right-handed alpha
Helix 7
AA7
A
136 143Right-handed alpha
Helix 8
AA8
A
155 172Right-handed alpha
Helix 9
AA9
A
185 204Right-handed alpha
Helix 10
AB1
A
217 226Right-handed alpha
Helix 11
AB2
A
229 234Right-handed alpha
Helix 12
AB3
A
237 251Right-handed alpha
Helix 13
AB4
A
263 272Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JVF.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
42 47parallel
Strand 4
A
123 128parallel
Strand 5
A
11 16parallel
Strand 6
A
145 150parallel
Strand 7
A
175 183parallel
Strand 8
A
207 215parallel
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