Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JVG entry

There is 1 chain in PDB entry 5JVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	G 1	A 502

There are 75 helices in PDB entry 5JVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	136	Right-handed 310
Helix 2	AA2	A	261	266	Right-handed 310
Helix 3	AA3	B	60	70	Right-handed alpha
Helix 4	AA4	B	115	120	Right-handed alpha
Helix 5	AA5	C	23	39	Right-handed alpha
Helix 6	AA6	C	96	113	Right-handed alpha
Helix 7	AA7	C	122	126	Right-handed 310
Helix 8	AA8	C	130	140	Right-handed alpha
Helix 9	AA9	C	154	160	Right-handed alpha
Helix 10	AB1	C	176	183	Right-handed alpha
Helix 11	AB2	D	11	18	Right-handed alpha
Helix 12	AB3	D	49	62	Right-handed alpha
Helix 13	AB4	D	93	106	Right-handed alpha
Helix 14	AB5	D	107	111	Right-handed 310
Helix 15	AB6	D	163	170	Right-handed alpha
Helix 16	AB7	E	64	79	Right-handed alpha
Helix 17	AB8	E	137	151	Right-handed alpha
Helix 18	AB9	F	78	83	Right-handed alpha
Helix 19	AC1	F	102	107	Right-handed alpha
Helix 20	AC2	F	119	124	Right-handed 310
Helix 21	AC3	F	129	135	Right-handed alpha
Helix 22	AC4	G	50	64	Right-handed alpha
Helix 23	AC5	G	116	122	Right-handed 310
Helix 24	AC6	G	123	134	Right-handed alpha
Helix 25	AC7	G	138	145	Right-handed alpha
Helix 26	AC8	H	116	121	Right-handed alpha
Helix 27	AC9	H	123	129	Right-handed alpha
Helix 28	AD1	I	55	60	Right-handed alpha
Helix 29	AD2	I	77	81	Right-handed alpha
Helix 30	AD3	I	126	135	Right-handed alpha
Helix 31	AD4	J	47	59	Right-handed alpha
Helix 32	AD5	J	111	124	Right-handed alpha
Helix 33	AD6	K	15	31	Right-handed alpha
Helix 34	AD7	K	38	56	Right-handed alpha
Helix 35	AD8	K	59	70	Right-handed alpha
Helix 36	AD9	K	72	82	Right-handed alpha
Helix 37	AE1	K	82	87	Right-handed alpha
Helix 38	AE2	L	9	17	Right-handed alpha
Helix 39	AE3	L	20	25	Right-handed alpha
Helix 40	AE4	L	67	81	Right-handed alpha
Helix 41	AE5	L	97	108	Right-handed alpha
Helix 42	AE6	M	8	18	Right-handed alpha
Helix 43	AE7	M	60	63	Right-handed 310
Helix 44	AE8	N	9	21	Right-handed alpha
Helix 45	AE9	N	26	31	Right-handed alpha
Helix 46	AF1	N	31	37	Right-handed alpha
Helix 47	AF2	N	38	72	Right-handed alpha
Helix 48	AF3	N	75	86	Right-handed alpha
Helix 49	AF4	N	95	102	Right-handed alpha
Helix 50	AF5	N	102	116	Right-handed alpha
Helix 51	AF6	O	40	44	Right-handed 310
Helix 52	AF7	O	49	54	Right-handed alpha
Helix 53	AF8	P	10	18	Right-handed alpha
Helix 54	AF9	P	34	46	Right-handed alpha
Helix 55	AG1	P	49	59	Right-handed alpha
Helix 56	AG2	P	64	81	Right-handed alpha
Helix 57	AG3	P	86	88	Right-handed 310
Helix 58	AG4	P	110	112	Right-handed 310
Helix 59	AG5	Q	13	20	Right-handed alpha
Helix 60	AG6	Q	34	43	Right-handed alpha
Helix 61	AG7	S	9	13	Right-handed 310
Helix 62	AG8	S	42	47	Right-handed alpha
Helix 63	AG9	S	150	152	Right-handed 310
Helix 64	AH1	U	63	71	Right-handed alpha
Helix 65	AH2	V	10	34	Right-handed alpha
Helix 66	AH3	V	40	63	Right-handed alpha
Helix 67	AH4	W	13	24	Right-handed alpha
Helix 68	AH5	W	37	48	Right-handed alpha
Helix 69	AH6	Z	12	20	Right-handed alpha
Helix 70	AH7	Z	21	23	Right-handed 310
Helix 71	AH8	2	17	24	Right-handed alpha
Helix 72	AH9	2	24	36	Right-handed alpha
Helix 73	AI1	2	42	46	Right-handed 310
Helix 74	AI2	3	38	42	Right-handed 310
Helix 75	AI3	3	52	57	Right-handed 310

There are 39 sheets in PDB entry 5JVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	92	93	anti-parallel
Strand 3	A	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	141	143	anti-parallel
Strand 4	A	163	168	anti-parallel
Strand 5	A	172	176	anti-parallel
Strand 6	A	182	186	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	153	155	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	3	16	anti-parallel
Strand 5	B	19	27	anti-parallel
Strand 6	B	181	185	anti-parallel
Strand 7	B	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	78	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	169	first strand
Strand 2	C	148	150	parallel
Strand 3	C	185	187	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	87	92	anti-parallel
Strand 3	D	31	38	anti-parallel
Strand 4	D	153	158	anti-parallel
Strand 5	D	128	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	23	27	anti-parallel
Strand 3	E	33	34	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	50	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	127	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	83	90	anti-parallel
Strand 4	E	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	99	first strand
Strand 2	E	102	106	anti-parallel
Strand 3	E	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	79	83	parallel
Strand 3	G	41	45	parallel
Strand 4	G	166	168	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	50	57	anti-parallel
Strand 4	H	70	76	anti-parallel
Strand 5	H	95	98	anti-parallel
Strand 6	H	7	10	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	82	first strand
Strand 2	H	88	91	anti-parallel
Strand 3	M	76	82	anti-parallel
Strand 4	M	65	71	anti-parallel
Strand 5	M	53	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	76	first strand
Strand 2	I	106	109	parallel
Strand 3	I	124	125	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	121	first strand
Strand 2	I	138	141	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	67	first strand
Strand 2	J	103	107	anti-parallel
Strand 3	J	33	37	anti-parallel
Strand 4	J	130	132	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	44	first strand
Strand 2	J	93	98	anti-parallel
Strand 3	J	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	37	first strand
Strand 2	K	110	114	anti-parallel
Strand 3	K	96	101	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	33	first strand
Strand 2	L	38	43	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	46	51	first strand
Strand 2	M	33	38	anti-parallel
Strand 3	M	88	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	18	21	first strand
Strand 2	O	89	97	anti-parallel
Strand 3	O	55	65	anti-parallel
Strand 4	O	31	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	74	first strand
Strand 2	O	81	86	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	25	31	first strand
Strand 2	P	114	130	anti-parallel
Strand 3	P	90	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	10	first strand
Strand 2	Q	24	29	anti-parallel
Strand 3	Q	75	82	anti-parallel
Strand 4	Q	50	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	21	23	first strand
Strand 2	R	33	40	anti-parallel
Strand 3	R	44	48	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	55	56	first strand
Strand 2	R	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	18	21	first strand
Strand 2	S	32	35	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	51	52	first strand
Strand 2	S	64	68	anti-parallel
Strand 3	S	82	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	55	56	first strand
Strand 2	S	60	61	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	112	115	first strand
Strand 2	S	167	172	anti-parallel
Strand 3	S	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	30	31	first strand
Strand 2	T	65	70	anti-parallel
Strand 3	T	78	82	anti-parallel
Strand 4	T	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	51	54	first strand
Strand 2	T	57	61	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	31	33	first strand
Strand 2	W	2	5	anti-parallel
Strand 3	W	51	53	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	31	33	first strand
Strand 2	Z	38	40	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	10	11	first strand
Strand 2	1	26	27	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	15	16	first strand
Strand 2	3	22	24	anti-parallel
Strand 3	3	47	48	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVG