Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JVJ entry

There are 2 chains in PDB entry 5JVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1VAL 874
B
 LYS 2ARG 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5JVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 35Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
63 80Right-handed alpha
Helix 4
AA4
A
115 127Right-handed alpha
Helix 5
AA5
A
127 146Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
174 194Right-handed alpha
Helix 8
AA8
A
200 217Right-handed alpha
Helix 9
AA9
A
220 229Right-handed alpha
Helix 10
AB1
A
278 285Right-handed alpha
Helix 11
AB2
A
292 299Right-handed alpha
Helix 12
AB3
A
299 318Right-handed alpha
Helix 13
AB4
A
343 357Right-handed alpha
Helix 14
AB5
A
361 369Right-handed alpha
Helix 15
AB6
A
370 377Right-handed alpha
Helix 16
AB7
A
384 390Right-handed 310
Helix 17
AB8
A
411 422Right-handed alpha
Helix 18
AB9
A
433 435Right-handed 310
Helix 19
AC1
A
436 443Right-handed alpha
Helix 20
AC2
A
455 464Right-handed alpha
Helix 21
AC3
A
519 533Right-handed alpha
Helix 22
AC4
A
543 553Right-handed alpha
Helix 23
AC5
A
564 566Right-handed 310
Helix 24
AC6
A
570 582Right-handed alpha
Helix 25
AC7
A
585 611Right-handed alpha
Helix 26
AC8
A
624 629Right-handed 310
Helix 27
AC9
A
633 646Right-handed alpha
Helix 28
AD1
A
648 660Right-handed alpha
Helix 29
AD2
A
663 667Right-handed 310
Helix 30
AD3
A
670 677Right-handed alpha
Helix 31
AD4
A
677 697Right-handed alpha
Helix 32
AD5
A
713 736Right-handed alpha
Helix 33
AD6
A
749 755Right-handed alpha
Helix 34
AD7
A
755 761Right-handed alpha
Helix 35
AD8
A
769 779Right-handed alpha
Helix 36
AD9
A
785 795Right-handed alpha
Helix 37
AE1
A
810 826Right-handed alpha
Helix 38
AE2
A
835 839Right-handed 310
Helix 39
AE3
A
840 851Right-handed alpha
Helix 40
AE4
A
858 860Right-handed 310
Helix 41
AE5
A
861 872Right-handed alpha
Helix 42
AE6
B
24 35Right-handed alpha
Helix 43
AE7
B
67 80Right-handed alpha
Helix 44
AE8
B
127 146Right-handed alpha
Helix 45
AE9
B
150 162Right-handed alpha
Helix 46
AF1
B
169 173Right-handed 310
Helix 47
AF2
B
174 191Right-handed alpha
Helix 48
AF3
B
200 213Right-handed alpha
Helix 49
AF4
B
280 285Right-handed alpha
Helix 50
AF5
B
292 299Right-handed alpha
Helix 51
AF6
B
299 318Right-handed alpha
Helix 52
AF7
B
343 357Right-handed alpha
Helix 53
AF8
B
361 369Right-handed alpha
Helix 54
AF9
B
370 379Right-handed alpha
Helix 55
AG1
B
384 390Right-handed 310
Helix 56
AG2
B
411 422Right-handed alpha
Helix 57
AG3
B
433 435Right-handed 310
Helix 58
AG4
B
436 443Right-handed alpha
Helix 59
AG5
B
455 464Right-handed alpha
Helix 60
AG6
B
520 533Right-handed alpha
Helix 61
AG7
B
543 553Right-handed alpha
Helix 62
AG8
B
564 566Right-handed 310
Helix 63
AG9
B
570 582Right-handed alpha
Helix 64
AH1
B
585 611Right-handed alpha
Helix 65
AH2
B
624 629Right-handed 310
Helix 66
AH3
B
634 644Right-handed alpha
Helix 67
AH4
B
648 660Right-handed alpha
Helix 68
AH5
B
663 667Right-handed 310
Helix 69
AH6
B
670 677Right-handed alpha
Helix 70
AH7
B
677 697Right-handed alpha
Helix 71
AH8
B
713 736Right-handed alpha
Helix 72
AH9
B
749 755Right-handed alpha
Helix 73
AI1
B
755 761Right-handed alpha
Helix 74
AI2
B
769 779Right-handed alpha
Helix 75
AI3
B
784 787Right-handed 310
Helix 76
AI4
B
788 795Right-handed alpha
Helix 77
AI5
B
810 826Right-handed alpha
Helix 78
AI6
B
835 839Right-handed 310
Helix 79
AI7
B
840 851Right-handed alpha
Helix 80
AI8
B
858 860Right-handed 310
Helix 81
AI9
B
861 872Right-handed alpha
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There are 10 sheets in PDB entry 5JVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
4 8anti-parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
92 97anti-parallel
Strand 6
A
109 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
253 258anti-parallel
Strand 4
A
321 328anti-parallel
Strand 5
A
331 339anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
505 508anti-parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
403 409anti-parallel
Strand 5
A
425 429parallel
Strand 6
A
445 448parallel
Strand 7
A
467 470parallel
Strand 8
A
397 400anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
483 486anti-parallel
Strand 3
A
489 492anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 540first strand
Strand 2
A
558 562parallel
Strand 3
A
615 619parallel
Strand 4
A
703 708parallel
Strand 5
A
742 747parallel
Strand 6
A
765 768parallel
Strand 7
A
830 833parallel
Strand 8
A
854 857parallel
Strand 9
A
536 540parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
42 45anti-parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
92 96anti-parallel
Strand 5
B
109 112anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
270 275anti-parallel
Strand 3
B
253 258anti-parallel
Strand 4
B
321 327anti-parallel
Strand 5
B
332 339anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
505 508anti-parallel
Strand 3
B
496 500anti-parallel
Strand 4
B
403 409anti-parallel
Strand 5
B
425 429parallel
Strand 6
B
445 448parallel
Strand 7
B
467 470parallel
Strand 8
B
397 400anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
483 486anti-parallel
Strand 3
B
489 492anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
830 833first strand
Strand 2
B
765 768parallel
Strand 3
B
742 747parallel
Strand 4
B
703 708parallel
Strand 5
B
615 619parallel
Strand 6
B
558 562parallel
Strand 7
B
536 540parallel
Strand 8
B
854 857parallel
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