Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JVK entry

There are 3 chains in PDB entry 5JVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	LYS 525
B	LYS 36	LYS 525
C	LYS 36	LYS 525

There are 44 helices in PDB entry 5JVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	128	Right-handed 310
Helix 2	AA2	A	143	154	Right-handed alpha
Helix 3	AA3	A	165	169	Right-handed alpha
Helix 4	AA4	A	178	191	Right-handed alpha
Helix 5	AA5	A	219	238	Right-handed alpha
Helix 6	AA6	A	239	241	Right-handed 310
Helix 7	AA7	A	258	274	Right-handed alpha
Helix 8	AA8	A	286	290	Right-handed 310
Helix 9	AA9	A	295	302	Right-handed alpha
Helix 10	AB1	A	304	308	Right-handed 310
Helix 11	AB2	A	337	352	Right-handed alpha
Helix 12	AB3	A	375	393	Right-handed alpha
Helix 13	AB4	A	413	417	Right-handed 310
Helix 14	AB5	A	428	442	Right-handed alpha
Helix 15	AB6	A	488	490	Right-handed 310
Helix 16	AB7	B	124	128	Right-handed 310
Helix 17	AB8	B	143	154	Right-handed alpha
Helix 18	AB9	B	165	169	Right-handed alpha
Helix 19	AC1	B	178	191	Right-handed alpha
Helix 20	AC2	B	219	238	Right-handed alpha
Helix 21	AC3	B	239	241	Right-handed 310
Helix 22	AC4	B	258	274	Right-handed alpha
Helix 23	AC5	B	286	290	Right-handed 310
Helix 24	AC6	B	295	302	Right-handed alpha
Helix 25	AC7	B	304	308	Right-handed 310
Helix 26	AC8	B	337	352	Right-handed alpha
Helix 27	AC9	B	375	393	Right-handed alpha
Helix 28	AD1	B	413	417	Right-handed 310
Helix 29	AD2	B	428	442	Right-handed alpha
Helix 30	AD3	C	124	128	Right-handed 310
Helix 31	AD4	C	143	154	Right-handed alpha
Helix 32	AD5	C	165	169	Right-handed alpha
Helix 33	AD6	C	178	191	Right-handed alpha
Helix 34	AD7	C	219	238	Right-handed alpha
Helix 35	AD8	C	239	241	Right-handed 310
Helix 36	AD9	C	258	274	Right-handed alpha
Helix 37	AE1	C	286	290	Right-handed 310
Helix 38	AE2	C	295	302	Right-handed alpha
Helix 39	AE3	C	304	308	Right-handed 310
Helix 40	AE4	C	337	352	Right-handed alpha
Helix 41	AE5	C	375	393	Right-handed alpha
Helix 42	AE6	C	413	417	Right-handed 310
Helix 43	AE7	C	428	442	Right-handed alpha
Helix 44	AE8	C	488	490	Right-handed 310

There are 16 sheets in PDB entry 5JVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	49	56	anti-parallel
Strand 3	A	86	91	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	109	120	parallel
Strand 3	A	95	104	anti-parallel
Strand 4	A	63	70	anti-parallel
Strand 5	A	76	81	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	158	164	parallel
Strand 3	A	194	200	parallel
Strand 4	A	243	246	parallel
Strand 5	A	278	281	parallel
Strand 6	A	310	313	parallel
Strand 7	A	361	367	parallel
Strand 8	A	399	401	parallel
Strand 9	A	132	135	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	465	473	anti-parallel
Strand 4	A	520	524	anti-parallel
Strand 5	A	492	495	anti-parallel
Strand 6	A	501	502	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	484	first strand
Strand 2	A	510	515	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	86	91	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	108	120	parallel
Strand 3	B	95	105	anti-parallel
Strand 4	B	62	70	anti-parallel
Strand 5	B	76	81	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	158	164	parallel
Strand 3	B	194	200	parallel
Strand 4	B	243	246	parallel
Strand 5	B	278	281	parallel
Strand 6	B	310	313	parallel
Strand 7	B	361	367	parallel
Strand 8	B	399	401	parallel
Strand 9	B	132	135	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	335	336	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	451	first strand
Strand 2	B	455	462	anti-parallel
Strand 3	B	465	473	anti-parallel
Strand 4	B	520	524	anti-parallel
Strand 5	B	492	495	anti-parallel
Strand 6	B	501	502	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	484	first strand
Strand 2	B	510	515	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	49	56	anti-parallel
Strand 3	C	86	91	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	108	120	parallel
Strand 3	C	95	105	anti-parallel
Strand 4	C	63	70	anti-parallel
Strand 5	C	76	81	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	158	164	parallel
Strand 3	C	194	200	parallel
Strand 4	C	243	246	parallel
Strand 5	C	278	281	parallel
Strand 6	C	310	313	parallel
Strand 7	C	361	367	parallel
Strand 8	C	399	401	parallel
Strand 9	C	132	135	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	451	first strand
Strand 2	C	455	462	anti-parallel
Strand 3	C	465	473	anti-parallel
Strand 4	C	520	524	anti-parallel
Strand 5	C	492	495	anti-parallel
Strand 6	C	501	502	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	484	first strand
Strand 2	C	510	515	anti-parallel
Strand 3	C	506	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVK