Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JVL entry

There are 2 chains in PDB entry 5JVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	VAL 874
B	PHE 258	LEU 814

There are155 helices in PDB entry 5JVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	35	Right-handed alpha
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	63	80	Right-handed alpha
Helix 4	AA4	A	115	127	Right-handed alpha
Helix 5	AA5	A	127	146	Right-handed alpha
Helix 6	AA6	A	150	165	Right-handed alpha
Helix 7	AA7	A	169	173	Right-handed 310
Helix 8	AA8	A	174	194	Right-handed alpha
Helix 9	AA9	A	200	217	Right-handed alpha
Helix 10	AB1	A	218	228	Right-handed alpha
Helix 11	AB2	A	278	282	Right-handed 310
Helix 12	AB3	A	292	299	Right-handed alpha
Helix 13	AB4	A	299	318	Right-handed alpha
Helix 14	AB5	A	343	357	Right-handed alpha
Helix 15	AB6	A	361	367	Right-handed alpha
Helix 16	AB7	A	370	378	Right-handed alpha
Helix 17	AB8	A	384	390	Right-handed 310
Helix 18	AB9	A	411	421	Right-handed alpha
Helix 19	AC1	A	433	435	Right-handed 310
Helix 20	AC2	A	436	443	Right-handed alpha
Helix 21	AC3	A	455	465	Right-handed alpha
Helix 22	AC4	A	519	533	Right-handed alpha
Helix 23	AC5	A	543	553	Right-handed alpha
Helix 24	AC6	A	564	566	Right-handed 310
Helix 25	AC7	A	570	582	Right-handed alpha
Helix 26	AC8	A	585	611	Right-handed alpha
Helix 27	AC9	A	624	629	Right-handed 310
Helix 28	AD1	A	633	646	Right-handed alpha
Helix 29	AD2	A	648	660	Right-handed alpha
Helix 30	AD3	A	663	667	Right-handed 310
Helix 31	AD4	A	670	677	Right-handed alpha
Helix 32	AD5	A	677	698	Right-handed alpha
Helix 33	AD6	A	713	736	Right-handed alpha
Helix 34	AD7	A	749	755	Right-handed alpha
Helix 35	AD8	A	755	761	Right-handed alpha
Helix 36	AD9	A	769	779	Right-handed alpha
Helix 37	AE1	A	785	795	Right-handed alpha
Helix 38	AE2	A	810	826	Right-handed alpha
Helix 39	AE3	A	835	839	Right-handed 310
Helix 40	AE4	A	840	850	Right-handed alpha
Helix 41	AE5	A	858	860	Right-handed 310
Helix 42	AE6	A	861	872	Right-handed alpha
Helix 43	AE7	B	307	318	Right-handed alpha
Helix 44	AE8	B	343	357	Right-handed alpha
Helix 45	AE9	B	361	369	Right-handed alpha
Helix 46	AF1	B	370	378	Right-handed alpha
Helix 47	AF2	B	384	390	Right-handed 310
Helix 48	AF3	B	411	421	Right-handed alpha
Helix 49	AF4	B	455	465	Right-handed alpha
Helix 50	AF5	B	519	533	Right-handed alpha
Helix 51	AF6	B	543	553	Right-handed alpha
Helix 52	AF7	B	564	566	Right-handed 310
Helix 53	AF8	B	570	582	Right-handed alpha
Helix 54	AF9	B	585	611	Right-handed alpha
Helix 55	AG1	B	624	629	Right-handed 310
Helix 56	AG2	B	633	646	Right-handed alpha
Helix 57	AG3	B	649	660	Right-handed alpha
Helix 58	AG4	B	663	667	Right-handed 310
Helix 59	AG5	B	670	677	Right-handed alpha
Helix 60	AG6	B	677	698	Right-handed alpha
Helix 61	AG7	B	713	736	Right-handed alpha
Helix 62	AG8	B	749	755	Right-handed alpha
Helix 63	AG9	B	755	761	Right-handed alpha
Helix 64	AH1	B	769	779	Right-handed alpha
Helix 65	AH2	B	784	787	Right-handed 310
Helix 66	AH3	B	788	795	Right-handed alpha
Helix 67	AH4	B	810	826	Right-handed alpha
Helix 68	AH5	B	835	839	Right-handed 310
Helix 69	AH6	B	840	850	Right-handed alpha
Helix 70	AH7	B	858	860	Right-handed 310
Helix 71	AH8	B	861	872	Right-handed alpha
Helix 72	AH9	C	18	35	Right-handed alpha
Helix 73	AI1	C	46	56	Right-handed alpha
Helix 74	AI2	C	63	80	Right-handed alpha
Helix 75	AI3	C	115	126	Right-handed alpha
Helix 76	AI4	C	127	148	Right-handed alpha
Helix 77	AI5	C	150	165	Right-handed alpha
Helix 78	AI6	C	169	173	Right-handed 310
Helix 79	AI7	C	174	193	Right-handed alpha
Helix 80	AI8	C	200	216	Right-handed alpha
Helix 81	AI9	C	279	284	Right-handed alpha
Helix 82	AJ1	C	291	299	Right-handed alpha
Helix 83	AJ2	C	299	318	Right-handed alpha
Helix 84	AJ3	C	343	357	Right-handed alpha
Helix 85	AJ4	C	361	368	Right-handed alpha
Helix 86	AJ5	C	370	379	Right-handed alpha
Helix 87	AJ6	C	384	390	Right-handed 310
Helix 88	AJ7	C	411	421	Right-handed alpha
Helix 89	AJ8	C	433	435	Right-handed 310
Helix 90	AJ9	C	436	443	Right-handed alpha
Helix 91	AK1	C	455	464	Right-handed alpha
Helix 92	AK2	C	521	533	Right-handed alpha
Helix 93	AK3	C	543	553	Right-handed alpha
Helix 94	AK4	C	564	566	Right-handed 310
Helix 95	AK5	C	570	582	Right-handed alpha
Helix 96	AK6	C	585	611	Right-handed alpha
Helix 97	AK7	C	624	629	Right-handed 310
Helix 98	AK8	C	633	646	Right-handed alpha
Helix 99	AK9	C	648	660	Right-handed alpha
Helix 100	AL1	C	663	667	Right-handed 310
Helix 101	AL2	C	670	677	Right-handed alpha
Helix 102	AL3	C	677	698	Right-handed alpha
Helix 103	AL4	C	713	736	Right-handed alpha
Helix 104	AL5	C	749	755	Right-handed alpha
Helix 105	AL6	C	755	761	Right-handed alpha
Helix 106	AL7	C	769	779	Right-handed alpha
Helix 107	AL8	C	785	795	Right-handed alpha
Helix 108	AL9	C	810	826	Right-handed alpha
Helix 109	AM1	C	835	839	Right-handed 310
Helix 110	AM2	C	840	850	Right-handed alpha
Helix 111	AM3	C	858	860	Right-handed 310
Helix 112	AM4	C	861	872	Right-handed alpha
Helix 113	AM5	D	18	35	Right-handed alpha
Helix 114	AM6	D	46	56	Right-handed alpha
Helix 115	AM7	D	63	80	Right-handed alpha
Helix 116	AM8	D	115	127	Right-handed alpha
Helix 117	AM9	D	127	148	Right-handed alpha
Helix 118	AN1	D	150	165	Right-handed alpha
Helix 119	AN2	D	169	173	Right-handed 310
Helix 120	AN3	D	174	194	Right-handed alpha
Helix 121	AN4	D	200	217	Right-handed alpha
Helix 122	AN5	D	218	228	Right-handed alpha
Helix 123	AN6	D	279	284	Right-handed alpha
Helix 124	AN7	D	291	299	Right-handed alpha
Helix 125	AN8	D	299	318	Right-handed alpha
Helix 126	AN9	D	343	357	Right-handed alpha
Helix 127	AO1	D	361	368	Right-handed alpha
Helix 128	AO2	D	370	379	Right-handed alpha
Helix 129	AO3	D	384	390	Right-handed 310
Helix 130	AO4	D	411	421	Right-handed alpha
Helix 131	AO5	D	433	435	Right-handed 310
Helix 132	AO6	D	436	443	Right-handed alpha
Helix 133	AO7	D	455	464	Right-handed alpha
Helix 134	AO8	D	521	533	Right-handed alpha
Helix 135	AO9	D	543	553	Right-handed alpha
Helix 136	AP1	D	564	566	Right-handed 310
Helix 137	AP2	D	570	582	Right-handed alpha
Helix 138	AP3	D	585	611	Right-handed alpha
Helix 139	AP4	D	624	629	Right-handed 310
Helix 140	AP5	D	633	646	Right-handed alpha
Helix 141	AP6	D	648	660	Right-handed alpha
Helix 142	AP7	D	663	667	Right-handed 310
Helix 143	AP8	D	670	677	Right-handed alpha
Helix 144	AP9	D	677	698	Right-handed alpha
Helix 145	AQ1	D	713	736	Right-handed alpha
Helix 146	AQ2	D	749	755	Right-handed alpha
Helix 147	AQ3	D	755	761	Right-handed alpha
Helix 148	AQ4	D	769	779	Right-handed alpha
Helix 149	AQ5	D	784	787	Right-handed 310
Helix 150	AQ6	D	788	795	Right-handed alpha
Helix 151	AQ7	D	810	826	Right-handed alpha
Helix 152	AQ8	D	835	839	Right-handed 310
Helix 153	AQ9	D	840	850	Right-handed alpha
Helix 154	AR1	D	858	860	Right-handed 310
Helix 155	AR2	D	861	872	Right-handed alpha

There are 21 sheets in PDB entry 5JVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	4	8	anti-parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	92	97	anti-parallel
Strand 6	A	109	112	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	253	258	anti-parallel
Strand 4	A	321	328	anti-parallel
Strand 5	A	331	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	513	514	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	505	508	anti-parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	403	409	anti-parallel
Strand 5	A	425	429	parallel
Strand 6	A	445	448	parallel
Strand 7	A	467	470	parallel
Strand 8	A	397	400	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	489	492	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	558	562	parallel
Strand 3	A	615	619	parallel
Strand 4	A	703	708	parallel
Strand 5	A	742	747	parallel
Strand 6	A	765	768	parallel
Strand 7	A	830	833	parallel
Strand 8	A	854	857	parallel
Strand 9	A	536	540	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	513	514	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	505	508	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	403	408	anti-parallel
Strand 5	B	425	426	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	833	first strand
Strand 2	B	765	768	parallel
Strand 3	B	742	747	parallel
Strand 4	B	703	708	parallel
Strand 5	B	615	619	parallel
Strand 6	B	558	562	parallel
Strand 7	B	536	540	parallel
Strand 8	B	854	857	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	C	42	45	anti-parallel
Strand 4	C	237	242	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	109	112	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	275	first strand
Strand 2	C	253	258	anti-parallel
Strand 3	C	321	328	anti-parallel
Strand 4	C	331	339	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	513	514	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	395	first strand
Strand 2	C	505	508	anti-parallel
Strand 3	C	496	500	anti-parallel
Strand 4	C	403	409	anti-parallel
Strand 5	C	425	429	parallel
Strand 6	C	445	448	parallel
Strand 7	C	468	470	parallel
Strand 8	C	397	400	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	483	486	anti-parallel
Strand 3	C	489	492	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	833	first strand
Strand 2	C	765	768	parallel
Strand 3	C	742	747	parallel
Strand 4	C	703	708	parallel
Strand 5	C	615	619	parallel
Strand 6	C	558	562	parallel
Strand 7	C	536	540	parallel
Strand 8	C	854	857	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	4	8	anti-parallel
Strand 3	D	42	45	anti-parallel
Strand 4	D	237	242	anti-parallel
Strand 5	D	92	97	anti-parallel
Strand 6	D	109	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	275	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	321	328	anti-parallel
Strand 4	D	331	339	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	513	514	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	505	508	anti-parallel
Strand 3	D	496	500	anti-parallel
Strand 4	D	403	409	anti-parallel
Strand 5	D	425	429	parallel
Strand 6	D	445	448	parallel
Strand 7	D	467	470	parallel
Strand 8	D	397	400	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	478	first strand
Strand 2	D	483	486	anti-parallel
Strand 3	D	489	492	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	540	first strand
Strand 2	D	558	562	parallel
Strand 3	D	615	619	parallel
Strand 4	D	703	708	parallel
Strand 5	D	742	747	parallel
Strand 6	D	765	768	parallel
Strand 7	D	830	833	parallel
Strand 8	D	854	857	parallel
Strand 9	D	536	540	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVL