Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JVN entry

There is 1 chain in PDB entry 5JVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0VAL 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5JVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
63 80Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
127 146Right-handed alpha
Helix 6
AA6
A
150 166Right-handed alpha
Helix 7
AA7
A
169 173Right-handed 310
Helix 8
AA8
A
174 194Right-handed alpha
Helix 9
AA9
A
200 217Right-handed alpha
Helix 10
AB1
A
218 228Right-handed alpha
Helix 11
AB2
A
278 285Right-handed alpha
Helix 12
AB3
A
292 299Right-handed alpha
Helix 13
AB4
A
299 318Right-handed alpha
Helix 14
AB5
A
343 357Right-handed alpha
Helix 15
AB6
A
361 367Right-handed alpha
Helix 16
AB7
A
370 378Right-handed alpha
Helix 17
AB8
A
388 390Right-handed 310
Helix 18
AB9
A
411 421Right-handed alpha
Helix 19
AC1
A
433 435Right-handed 310
Helix 20
AC2
A
436 441Right-handed alpha
Helix 21
AC3
A
455 465Right-handed alpha
Helix 22
AC4
A
519 533Right-handed alpha
Helix 23
AC5
A
543 553Right-handed alpha
Helix 24
AC6
A
564 566Right-handed 310
Helix 25
AC7
A
570 582Right-handed alpha
Helix 26
AC8
A
585 611Right-handed alpha
Helix 27
AC9
A
624 629Right-handed alpha
Helix 28
AD1
A
633 646Right-handed alpha
Helix 29
AD2
A
648 660Right-handed alpha
Helix 30
AD3
A
663 667Right-handed 310
Helix 31
AD4
A
670 677Right-handed alpha
Helix 32
AD5
A
677 698Right-handed alpha
Helix 33
AD6
A
713 736Right-handed alpha
Helix 34
AD7
A
749 755Right-handed alpha
Helix 35
AD8
A
755 761Right-handed alpha
Helix 36
AD9
A
769 779Right-handed alpha
Helix 37
AE1
A
784 787Right-handed 310
Helix 38
AE2
A
788 795Right-handed alpha
Helix 39
AE3
A
810 826Right-handed alpha
Helix 40
AE4
A
835 839Right-handed 310
Helix 41
AE5
A
840 850Right-handed alpha
Helix 42
AE6
A
858 860Right-handed 310
Helix 43
AE7
A
861 872Right-handed alpha
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There are 6 sheets in PDB entry 5JVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
4 8anti-parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
92 97anti-parallel
Strand 6
A
109 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
253 258anti-parallel
Strand 4
A
321 328anti-parallel
Strand 5
A
331 339anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
513 514anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
505 508anti-parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
403 409anti-parallel
Strand 5
A
425 429parallel
Strand 6
A
445 448parallel
Strand 7
A
467 470parallel
Strand 8
A
397 400anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
483 484anti-parallel
Strand 3
A
491 492anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 833first strand
Strand 2
A
765 768parallel
Strand 3
A
742 747parallel
Strand 4
A
703 708parallel
Strand 5
A
615 619parallel
Strand 6
A
558 562parallel
Strand 7
A
536 540parallel
Strand 8
A
854 857parallel
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