Analysis of interatomic Contacts of Structural Units in PDB entry:
5JVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JVV entry

There are 2 chains in PDB entry 5JVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 3THR 299
A
 SER 3THR 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5JVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 18Right-handed alpha
Helix 2
AA2
B
36 43Right-handed alpha
Helix 3
AA3
B
175 182Right-handed alpha
Helix 4
AA4
B
207 212Right-handed alpha
Helix 5
AA5
B
216 221Right-handed 310
Helix 6
AA6
B
232 237Right-handed 310
Helix 7
AA7
B
249 257Right-handed alpha
Helix 8
AA8
B
269 281Right-handed alpha
Helix 9
AA9
B
282 286Right-handed 310
Helix 10
AB1
A
11 18Right-handed alpha
Helix 11
AB2
A
36 43Right-handed alpha
Helix 12
AB3
A
144 148Right-handed 310
Helix 13
AB4
A
175 182Right-handed alpha
Helix 14
AB5
A
204 206Right-handed 310
Helix 15
AB6
A
207 212Right-handed alpha
Helix 16
AB7
A
216 220Right-handed 310
Helix 17
AB8
A
232 237Right-handed 310
Helix 18
AB9
A
249 257Right-handed alpha
Helix 19
AC1
A
269 281Right-handed alpha
Helix 20
AC2
A
282 286Right-handed 310
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There are 8 sheets in PDB entry 5JVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
290 299anti-parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
46 48anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
290 299anti-parallel
Strand 3
B
85 93anti-parallel
Strand 4
B
185 191anti-parallel
Strand 5
B
196 202anti-parallel
Strand 6
B
225 227anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
101 108anti-parallel
Strand 5
B
117 122anti-parallel
Strand 6
B
131 135anti-parallel
Strand 7
B
166 169anti-parallel
Strand 8
B
151 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
71 73parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
290 299anti-parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
46 48anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
290 299anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
185 191anti-parallel
Strand 5
A
196 202anti-parallel
Strand 6
A
225 227anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
101 108anti-parallel
Strand 5
A
117 122anti-parallel
Strand 6
A
131 135anti-parallel
Strand 7
A
166 169anti-parallel
Strand 8
A
151 154anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
71 73parallel
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