Analysis of interatomic Contacts of Structural Units in PDB entry:
5JW1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JW1 entry

There are 2 chains in PDB entry 5JW1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 33GLN 584
B
 HIS 33VAL 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5JW1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 82Right-handed alpha
Helix 2
AA2
A
85 95Right-handed alpha
Helix 3
AA3
A
96 105Right-handed alpha
Helix 4
AA4
A
106 118Right-handed alpha
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
174 183Right-handed alpha
Helix 7
AA7
A
196 208Right-handed alpha
Helix 8
AA8
A
231 236Right-handed alpha
Helix 9
AA9
A
238 246Right-handed alpha
Helix 10
AB1
A
266 271Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
296 321Right-handed alpha
Helix 13
AB4
A
325 348Right-handed alpha
Helix 14
AB5
A
348 355Right-handed alpha
Helix 15
AB6
A
363 368Right-handed 310
Helix 16
AB7
A
379 386Right-handed alpha
Helix 17
AB8
A
388 392Right-handed 310
Helix 18
AB9
A
404 409Right-handed alpha
Helix 19
AC1
A
411 430Right-handed alpha
Helix 20
AC2
A
442 444Right-handed 310
Helix 21
AC3
A
445 459Right-handed alpha
Helix 22
AC4
A
463 471Right-handed alpha
Helix 23
AC5
A
478 484Right-handed alpha
Helix 24
AC6
A
486 497Right-handed alpha
Helix 25
AC7
A
498 502Right-handed 310
Helix 26
AC8
A
503 511Right-handed alpha
Helix 27
AC9
A
520 537Right-handed alpha
Helix 28
AD1
A
538 542Right-handed 310
Helix 29
AD2
A
547 552Right-handed 310
Helix 30
AD3
A
553 562Right-handed alpha
Helix 31
AD4
A
564 573Right-handed alpha
Helix 32
AD5
B
73 83Right-handed alpha
Helix 33
AD6
B
85 94Right-handed alpha
Helix 34
AD7
B
96 104Right-handed alpha
Helix 35
AD8
B
106 120Right-handed alpha
Helix 36
AD9
B
139 145Right-handed alpha
Helix 37
AE1
B
174 183Right-handed alpha
Helix 38
AE2
B
196 208Right-handed alpha
Helix 39
AE3
B
231 236Right-handed alpha
Helix 40
AE4
B
238 246Right-handed alpha
Helix 41
AE5
B
266 271Right-handed alpha
Helix 42
AE6
B
281 285Right-handed 310
Helix 43
AE7
B
292 295Right-handed 310
Helix 44
AE8
B
296 321Right-handed alpha
Helix 45
AE9
B
325 348Right-handed alpha
Helix 46
AF1
B
348 355Right-handed alpha
Helix 47
AF2
B
363 368Right-handed 310
Helix 48
AF3
B
379 386Right-handed alpha
Helix 49
AF4
B
388 392Right-handed 310
Helix 50
AF5
B
404 409Right-handed alpha
Helix 51
AF6
B
411 419Right-handed alpha
Helix 52
AF7
B
419 430Right-handed alpha
Helix 53
AF8
B
442 444Right-handed 310
Helix 54
AF9
B
445 459Right-handed alpha
Helix 55
AG1
B
463 471Right-handed alpha
Helix 56
AG2
B
478 484Right-handed alpha
Helix 57
AG3
B
486 497Right-handed alpha
Helix 58
AG4
B
498 502Right-handed 310
Helix 59
AG5
B
503 511Right-handed alpha
Helix 60
AG6
B
520 537Right-handed alpha
Helix 61
AG7
B
538 542Right-handed 310
Helix 62
AG8
B
547 552Right-handed 310
Helix 63
AG9
B
553 562Right-handed alpha
Helix 64
AH1
B
564 573Right-handed alpha
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There are 9 sheets in PDB entry 5JW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
55 58anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
150 151anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
261 263anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
401 403anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
55 58anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 72anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 258first strand
Strand 2
B
261 263anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
401 403anti-parallel
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