Analysis of interatomic Contacts of Structural Units in PDB entry:
5JWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JWC entry

There are 2 chains in PDB entry 5JWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 39LYS 533
H
 ARG 39LYS 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5JWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 59Right-handed alpha
Helix 2
AA2
A
80 86Right-handed alpha
Helix 3
AA3
A
90 94Right-handed alpha
Helix 4
AA4
A
99 102Right-handed 310
Helix 5
AA5
A
159 164Right-handed alpha
Helix 6
AA6
A
169 187Right-handed alpha
Helix 7
AA7
A
193 201Right-handed alpha
Helix 8
AA8
A
209 225Right-handed alpha
Helix 9
AA9
A
225 231Right-handed alpha
Helix 10
AB1
A
231 236Right-handed alpha
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
314 322Right-handed alpha
Helix 13
AB4
A
323 328Right-handed 310
Helix 14
AB5
A
362 365Right-handed 310
Helix 15
AB6
A
366 374Right-handed alpha
Helix 16
AB7
A
380 387Right-handed alpha
Helix 17
AB8
A
387 393Right-handed alpha
Helix 18
AB9
A
394 399Right-handed 310
Helix 19
AC1
A
414 429Right-handed alpha
Helix 20
AC2
A
435 453Right-handed alpha
Helix 21
AC3
A
495 508Right-handed alpha
Helix 22
AC4
A
510 528Right-handed alpha
Helix 23
AC5
H
49 59Right-handed alpha
Helix 24
AC6
H
80 86Right-handed alpha
Helix 25
AC7
H
90 94Right-handed alpha
Helix 26
AC8
H
99 102Right-handed 310
Helix 27
AC9
H
159 164Right-handed alpha
Helix 28
AD1
H
169 187Right-handed alpha
Helix 29
AD2
H
193 201Right-handed alpha
Helix 30
AD3
H
209 225Right-handed alpha
Helix 31
AD4
H
225 231Right-handed alpha
Helix 32
AD5
H
231 236Right-handed alpha
Helix 33
AD6
H
254 268Right-handed alpha
Helix 34
AD7
H
314 322Right-handed alpha
Helix 35
AD8
H
323 328Right-handed 310
Helix 36
AD9
H
362 365Right-handed 310
Helix 37
AE1
H
366 374Right-handed alpha
Helix 38
AE2
H
380 387Right-handed alpha
Helix 39
AE3
H
387 392Right-handed alpha
Helix 40
AE4
H
393 394Right-handed 310
Helix 41
AE5
H
395 399Right-handed 310
Helix 42
AE6
H
414 429Right-handed alpha
Helix 43
AE7
H
435 453Right-handed alpha
Helix 44
AE8
H
495 508Right-handed alpha
Helix 45
AE9
H
510 528Right-handed alpha
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There are 16 sheets in PDB entry 5JWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
65 69parallel
Strand 3
A
42 46parallel
Strand 4
A
143 146parallel
Strand 5
A
349 351parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
95 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
136 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
311 313anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
304 307parallel
Strand 3
A
202 206parallel
Strand 4
A
239 244parallel
Strand 5
A
271 274parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
285 290anti-parallel
Strand 3
A
297 301anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
356 358parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 477first strand
Strand 2
A
480 485anti-parallel
Strand 3
A
488 491anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
111 113first strand
Strand 2
H
65 69parallel
Strand 3
H
42 46parallel
Strand 4
H
143 146parallel
Strand 5
H
349 351parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
74 76first strand
Strand 2
H
95 97anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 121first strand
Strand 2
H
126 130anti-parallel
Strand 3
H
136 140anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 152first strand
Strand 2
H
311 313anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 166first strand
Strand 2
H
304 307parallel
Strand 3
H
202 206parallel
Strand 4
H
239 244parallel
Strand 5
H
271 274parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
276 281first strand
Strand 2
H
285 290anti-parallel
Strand 3
H
297 301anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
333 335first strand
Strand 2
H
356 358parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
472 475first strand
Strand 2
H
481 485anti-parallel
Strand 3
H
488 491anti-parallel
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