Analysis of interatomic Contacts of Structural Units in PDB entry:
5JWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JWI entry

There are 2 chains in PDB entry 5JWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21PHE 717
B
 ASP 22THR 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5JWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
83 95Right-handed alpha
Helix 5
AA5
A
100 105Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
148 151Right-handed 310
Helix 9
AA9
A
152 158Right-handed alpha
Helix 10
AB1
A
159 165Right-handed alpha
Helix 11
AB2
A
165 170Right-handed alpha
Helix 12
AB3
A
205 210Right-handed alpha
Helix 13
AB4
A
283 293Right-handed alpha
Helix 14
AB5
A
293 315Right-handed alpha
Helix 15
AB6
A
316 347Right-handed alpha
Helix 16
AB7
A
348 367Right-handed alpha
Helix 17
AB8
A
370 386Right-handed alpha
Helix 18
AB9
A
386 400Right-handed alpha
Helix 19
AC1
A
404 409Right-handed 310
Helix 20
AC2
A
422 441Right-handed alpha
Helix 21
AC3
A
446 453Right-handed alpha
Helix 22
AC4
A
453 466Right-handed alpha
Helix 23
AC5
A
467 471Right-handed 310
Helix 24
AC6
A
472 482Right-handed alpha
Helix 25
AC7
A
484 496Right-handed alpha
Helix 26
AC8
A
497 499Right-handed 310
Helix 27
AC9
A
500 509Right-handed alpha
Helix 28
AD1
A
512 517Right-handed alpha
Helix 29
AD2
A
519 562Right-handed alpha
Helix 30
AD3
A
563 566Right-handed 310
Helix 31
AD4
A
598 605Right-handed alpha
Helix 32
AD5
A
609 613Right-handed 310
Helix 33
AD6
A
615 625Right-handed alpha
Helix 34
AD7
A
627 631Right-handed 310
Helix 35
AD8
A
672 679Right-handed 310
Helix 36
AD9
A
693 702Right-handed alpha
Helix 37
AE1
A
706 714Right-handed alpha
Helix 38
AE2
B
30 41Right-handed alpha
Helix 39
AE3
B
46 51Right-handed alpha
Helix 40
AE4
B
57 60Right-handed 310
Helix 41
AE5
B
83 94Right-handed alpha
Helix 42
AE6
B
100 105Right-handed alpha
Helix 43
AE7
B
110 114Right-handed 310
Helix 44
AE8
B
131 140Right-handed alpha
Helix 45
AE9
B
152 158Right-handed alpha
Helix 46
AF1
B
159 165Right-handed alpha
Helix 47
AF2
B
205 210Right-handed alpha
Helix 48
AF3
B
283 293Right-handed alpha
Helix 49
AF4
B
295 315Right-handed alpha
Helix 50
AF5
B
323 347Right-handed alpha
Helix 51
AF6
B
348 367Right-handed alpha
Helix 52
AF7
B
370 386Right-handed alpha
Helix 53
AF8
B
386 400Right-handed alpha
Helix 54
AF9
B
404 409Right-handed 310
Helix 55
AG1
B
433 441Right-handed alpha
Helix 56
AG2
B
454 460Right-handed alpha
Helix 57
AG3
B
461 466Right-handed alpha
Helix 58
AG4
B
467 471Right-handed 310
Helix 59
AG5
B
477 481Right-handed 310
Helix 60
AG6
B
484 490Right-handed alpha
Helix 61
AG7
B
490 496Right-handed alpha
Helix 62
AG8
B
512 517Right-handed alpha
Helix 63
AG9
B
519 539Right-handed alpha
Helix 64
AH1
B
539 561Right-handed alpha
Helix 65
AH2
B
562 566Right-handed 310
Helix 66
AH3
B
598 605Right-handed alpha
Helix 67
AH4
B
609 613Right-handed 310
Helix 68
AH5
B
615 625Right-handed alpha
Helix 69
AH6
B
627 631Right-handed 310
Helix 70
AH7
B
672 679Right-handed 310
Helix 71
AH8
B
693 702Right-handed alpha
Helix 72
AH9
B
706 714Right-handed alpha
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There are 7 sheets in PDB entry 5JWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
575 580anti-parallel
Strand 3
A
268 273anti-parallel
Strand 4
A
655 657anti-parallel
Strand 5
A
663 670anti-parallel
Strand 6
A
688 692anti-parallel
Strand 7
A
638 643anti-parallel
Strand 8
A
595 597anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
79 82anti-parallel
Strand 5
A
69 73anti-parallel
Strand 6
A
62 65anti-parallel
Strand 7
A
122 130anti-parallel
Strand 8
A
186 195anti-parallel
Strand 9
A
174 181anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
248 249anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
590 592anti-parallel
Strand 3
B
590 592anti-parallel
Strand 4
B
584 587anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
575 580anti-parallel
Strand 3
B
268 273anti-parallel
Strand 4
B
655 657anti-parallel
Strand 5
B
663 670anti-parallel
Strand 6
B
688 692anti-parallel
Strand 7
B
638 643anti-parallel
Strand 8
B
595 597anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
228 234anti-parallel
Strand 4
B
79 82anti-parallel
Strand 5
B
69 73anti-parallel
Strand 6
B
62 65anti-parallel
Strand 7
B
122 130anti-parallel
Strand 8
B
186 195anti-parallel
Strand 9
B
174 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
228 234anti-parallel
Strand 4
B
248 249anti-parallel
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