Analysis of interatomic Contacts of Structural Units in PDB entry:
5JWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JWQ entry

There are 4 chains in PDB entry 5JWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 19GLU 469
B
 THR 7ALA 94
C
 VAL 19ILE 467
D
 LYS 6ALA 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5JWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 68Right-handed alpha
Helix 2
AA2
A
80 89Right-handed alpha
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
95 100Right-handed alpha
Helix 5
AA5
A
124 139Right-handed alpha
Helix 6
AA6
A
148 153Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
293 309Right-handed alpha
Helix 9
AA9
A
320 325Right-handed alpha
Helix 10
AB1
A
334 339Right-handed alpha
Helix 11
AB2
A
350 354Right-handed 310
Helix 12
AB3
A
355 371Right-handed alpha
Helix 13
AB4
A
379 385Right-handed alpha
Helix 14
AB5
A
388 405Right-handed alpha
Helix 15
AB6
B
18 33Right-handed alpha
Helix 16
AB7
B
51 57Right-handed alpha
Helix 17
AB8
B
82 87Right-handed alpha
Helix 18
AB9
C
52 68Right-handed alpha
Helix 19
AC1
C
80 89Right-handed alpha
Helix 20
AC2
C
95 101Right-handed alpha
Helix 21
AC3
C
124 139Right-handed alpha
Helix 22
AC4
C
148 153Right-handed alpha
Helix 23
AC5
C
159 175Right-handed alpha
Helix 24
AC6
C
291 296Right-handed 310
Helix 25
AC7
C
297 309Right-handed alpha
Helix 26
AC8
C
323 328Right-handed alpha
Helix 27
AC9
C
329 331Right-handed 310
Helix 28
AD1
C
334 339Right-handed alpha
Helix 29
AD2
C
355 371Right-handed alpha
Helix 30
AD3
C
379 385Right-handed alpha
Helix 31
AD4
C
395 405Right-handed alpha
Helix 32
AD5
D
18 33Right-handed alpha
Helix 33
AD6
D
51 57Right-handed alpha
Helix 34
AD7
D
82 88Right-handed alpha
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There are 7 sheets in PDB entry 5JWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
72 76parallel
Strand 3
A
142 146parallel
Strand 4
A
178 183parallel
Strand 5
A
42 46parallel
Strand 6
A
204 213parallel
Strand 7
A
216 226anti-parallel
Strand 8
A
234 237anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
244 245anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
409 416parallel
Strand 3
A
374 377parallel
Strand 4
A
312 315parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
11 14parallel
Strand 3
B
64 67anti-parallel
Strand 4
B
74 77anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
72 76parallel
Strand 3
C
142 146parallel
Strand 4
C
178 183parallel
Strand 5
C
42 46parallel
Strand 6
C
204 213parallel
Strand 7
C
216 226anti-parallel
Strand 8
C
235 240anti-parallel
Strand 9
C
244 246anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
D
76 77parallel
Strand 3
D
64 66anti-parallel
Strand 4
D
11 14anti-parallel
Strand 5
D
44 46parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 377first strand
Strand 2
C
409 416parallel
Strand 3
C
283 289parallel
Strand 4
C
436 438parallel
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