Analysis of interatomic Contacts of Structural Units in PDB entry:
5JWR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JWR entry

There are 8 chains in PDB entry 5JWR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 18	LYS 250
B	LYS 6	ALA 94
C	GLU 18	TYR 249
D	LYS 6	LEU 92
E	ASP 150	ARG 281
F	VAL 149	GLU 282
G	VAL 149	ARG 281
H	ASN 148	GLU 282

There are 48 helices in PDB entry 5JWR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	52	67	Right-handed alpha
Helix 3	AA3	A	80	90	Right-handed alpha
Helix 4	AA4	A	94	101	Right-handed alpha
Helix 5	AA5	A	124	138	Right-handed alpha
Helix 6	AA6	A	147	149	Right-handed 310
Helix 7	AA7	A	150	155	Right-handed alpha
Helix 8	AA8	A	157	175	Right-handed alpha
Helix 9	AA9	A	193	197	Right-handed 310
Helix 10	AB1	B	18	35	Right-handed alpha
Helix 11	AB2	B	50	57	Right-handed alpha
Helix 12	AB3	B	83	90	Right-handed alpha
Helix 13	AB4	C	28	33	Right-handed alpha
Helix 14	AB5	C	52	67	Right-handed alpha
Helix 15	AB6	C	80	90	Right-handed alpha
Helix 16	AB7	C	94	101	Right-handed alpha
Helix 17	AB8	C	124	138	Right-handed alpha
Helix 18	AB9	C	147	152	Right-handed alpha
Helix 19	AC1	C	157	175	Right-handed alpha
Helix 20	AC2	D	18	35	Right-handed alpha
Helix 21	AC3	D	50	57	Right-handed alpha
Helix 22	AC4	D	83	90	Right-handed alpha
Helix 23	AC5	E	151	163	Right-handed alpha
Helix 24	AC6	E	173	181	Right-handed 310
Helix 25	AC7	E	182	204	Right-handed alpha
Helix 26	AC8	E	211	225	Right-handed alpha
Helix 27	AC9	E	228	249	Right-handed alpha
Helix 28	AD1	E	255	277	Right-handed alpha
Helix 29	AD2	F	150	166	Right-handed alpha
Helix 30	AD3	F	173	181	Right-handed 310
Helix 31	AD4	F	182	204	Right-handed alpha
Helix 32	AD5	F	210	225	Right-handed alpha
Helix 33	AD6	F	228	249	Right-handed alpha
Helix 34	AD7	F	255	277	Right-handed alpha
Helix 35	AD8	G	150	163	Right-handed alpha
Helix 36	AD9	G	173	181	Right-handed 310
Helix 37	AE1	G	182	204	Right-handed alpha
Helix 38	AE2	G	210	225	Right-handed alpha
Helix 39	AE3	G	228	249	Right-handed alpha
Helix 40	AE4	G	255	258	Right-handed 310
Helix 41	AE5	G	259	277	Right-handed alpha
Helix 42	AE6	H	150	162	Right-handed alpha
Helix 43	AE7	H	173	181	Right-handed 310
Helix 44	AE8	H	182	204	Right-handed alpha
Helix 45	AE9	H	211	225	Right-handed alpha
Helix 46	AF1	H	228	249	Right-handed alpha
Helix 47	AF2	H	255	258	Right-handed 310
Helix 48	AF3	H	259	277	Right-handed alpha

There are 6 sheets in PDB entry 5JWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	37	38	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	72	76	parallel
Strand 3	A	142	146	parallel
Strand 4	A	178	184	parallel
Strand 5	A	42	47	parallel
Strand 6	A	204	211	parallel
Strand 7	A	218	226	anti-parallel
Strand 8	A	235	240	anti-parallel
Strand 9	A	244	246	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	B	74	77	parallel
Strand 3	B	64	69	anti-parallel
Strand 4	B	7	14	anti-parallel
Strand 5	B	39	46	parallel
Strand 6	E	167	171	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	37	38	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	108	first strand
Strand 2	C	72	76	parallel
Strand 3	C	142	146	parallel
Strand 4	C	178	183	parallel
Strand 5	C	42	47	parallel
Strand 6	C	204	212	parallel
Strand 7	C	217	226	anti-parallel
Strand 8	C	235	240	anti-parallel
Strand 9	C	244	246	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	D	74	77	parallel
Strand 3	D	64	69	anti-parallel
Strand 4	D	8	14	anti-parallel
Strand 5	D	40	46	parallel
Strand 6	G	167	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JWR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JWR