Analysis of interatomic Contacts of Structural Units in PDB entry:
5JX0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JX0 entry

There are 4 chains in PDB entry 5JX0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 218
B	MET 1	TYR 218
C	MET 1	TYR 218
D	MET 1	TYR 218

There are 40 helices in PDB entry 5JX0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	19	32	Right-handed alpha
Helix 3	AA3	A	33	39	Right-handed alpha
Helix 4	AA4	A	45	49	Right-handed 310
Helix 5	AA5	A	50	55	Right-handed 310
Helix 6	AA6	A	86	101	Right-handed alpha
Helix 7	AA7	A	110	113	Right-handed 310
Helix 8	AA8	A	133	150	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	205	Right-handed alpha
Helix 11	AB2	A	211	214	Right-handed 310
Helix 12	AB3	B	16	18	Right-handed 310
Helix 13	AB4	B	19	39	Right-handed alpha
Helix 14	AB5	B	45	49	Right-handed 310
Helix 15	AB6	B	50	55	Right-handed 310
Helix 16	AB7	B	86	101	Right-handed alpha
Helix 17	AB8	B	110	113	Right-handed 310
Helix 18	AB9	B	133	150	Right-handed alpha
Helix 19	AC1	B	193	205	Right-handed alpha
Helix 20	AC2	B	211	214	Right-handed 310
Helix 21	AC3	C	16	18	Right-handed 310
Helix 22	AC4	C	19	39	Right-handed alpha
Helix 23	AC5	C	45	49	Right-handed 310
Helix 24	AC6	C	50	55	Right-handed 310
Helix 25	AC7	C	86	101	Right-handed alpha
Helix 26	AC8	C	110	113	Right-handed 310
Helix 27	AC9	C	133	149	Right-handed alpha
Helix 28	AD1	C	187	192	Right-handed alpha
Helix 29	AD2	C	193	205	Right-handed alpha
Helix 30	AD3	C	211	214	Right-handed 310
Helix 31	AD4	D	16	18	Right-handed 310
Helix 32	AD5	D	19	39	Right-handed alpha
Helix 33	AD6	D	45	49	Right-handed 310
Helix 34	AD7	D	50	55	Right-handed 310
Helix 35	AD8	D	86	101	Right-handed alpha
Helix 36	AD9	D	110	113	Right-handed 310
Helix 37	AE1	D	133	149	Right-handed alpha
Helix 38	AE2	D	187	192	Right-handed alpha
Helix 39	AE3	D	193	205	Right-handed alpha
Helix 40	AE4	D	211	214	Right-handed 310

There are 16 sheets in PDB entry 5JX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	12	15	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	125	126	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	62	66	parallel
Strand 3	A	154	158	parallel
Strand 4	A	175	179	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	216	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	12	15	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	125	126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	62	66	parallel
Strand 3	B	154	158	parallel
Strand 4	B	175	179	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	216	217	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	12	15	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	125	126	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	62	66	parallel
Strand 3	C	154	158	parallel
Strand 4	C	175	179	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	216	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	12	15	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	125	126	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	62	66	parallel
Strand 3	D	154	158	parallel
Strand 4	D	175	179	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JX0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JX0