Analysis of interatomic Contacts of Structural Units in PDB entry:
5JX3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JX3 entry

There are 8 chains in PDB entry 5JX3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 218
B	MET 1	TYR 218
C	SER -1	TYR 218
D	HIS 0	TYR 218
E	MET 1	TYR 218
F	MET 1	TYR 218
G	MET 1	TYR 218
H	MET 1	TYR 218

There are 82 helices in PDB entry 5JX3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed 310
Helix 2	AA2	A	22	38	Right-handed alpha
Helix 3	AA3	A	45	49	Right-handed 310
Helix 4	AA4	A	50	55	Right-handed 310
Helix 5	AA5	A	86	101	Right-handed alpha
Helix 6	AA6	A	110	113	Right-handed 310
Helix 7	AA7	A	133	149	Right-handed alpha
Helix 8	AA8	A	165	171	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	205	Right-handed alpha
Helix 11	AB2	A	211	214	Right-handed 310
Helix 12	AB3	B	16	21	Right-handed 310
Helix 13	AB4	B	22	39	Right-handed alpha
Helix 14	AB5	B	45	49	Right-handed 310
Helix 15	AB6	B	50	55	Right-handed 310
Helix 16	AB7	B	86	101	Right-handed alpha
Helix 17	AB8	B	110	113	Right-handed 310
Helix 18	AB9	B	133	149	Right-handed alpha
Helix 19	AC1	B	165	171	Right-handed alpha
Helix 20	AC2	B	193	205	Right-handed alpha
Helix 21	AC3	B	211	214	Right-handed 310
Helix 22	AC4	C	18	21	Right-handed 310
Helix 23	AC5	C	22	39	Right-handed alpha
Helix 24	AC6	C	45	49	Right-handed 310
Helix 25	AC7	C	50	55	Right-handed 310
Helix 26	AC8	C	86	101	Right-handed alpha
Helix 27	AC9	C	110	113	Right-handed 310
Helix 28	AD1	C	133	150	Right-handed alpha
Helix 29	AD2	C	184	188	Right-handed 310
Helix 30	AD3	C	193	205	Right-handed alpha
Helix 31	AD4	C	211	214	Right-handed 310
Helix 32	AD5	D	19	38	Right-handed alpha
Helix 33	AD6	D	45	49	Right-handed 310
Helix 34	AD7	D	50	55	Right-handed 310
Helix 35	AD8	D	86	101	Right-handed alpha
Helix 36	AD9	D	110	113	Right-handed 310
Helix 37	AE1	D	133	150	Right-handed alpha
Helix 38	AE2	D	163	169	Right-handed alpha
Helix 39	AE3	D	188	192	Right-handed 310
Helix 40	AE4	D	193	205	Right-handed alpha
Helix 41	AE5	D	211	214	Right-handed 310
Helix 42	AE6	E	16	21	Right-handed 310
Helix 43	AE7	E	22	38	Right-handed alpha
Helix 44	AE8	E	45	49	Right-handed 310
Helix 45	AE9	E	50	55	Right-handed 310
Helix 46	AF1	E	86	101	Right-handed alpha
Helix 47	AF2	E	110	113	Right-handed 310
Helix 48	AF3	E	133	149	Right-handed alpha
Helix 49	AF4	E	165	171	Right-handed alpha
Helix 50	AF5	E	184	188	Right-handed 310
Helix 51	AF6	E	193	205	Right-handed alpha
Helix 52	AF7	E	211	214	Right-handed 310
Helix 53	AF8	F	16	21	Right-handed 310
Helix 54	AF9	F	22	38	Right-handed alpha
Helix 55	AG1	F	45	49	Right-handed 310
Helix 56	AG2	F	50	55	Right-handed 310
Helix 57	AG3	F	86	101	Right-handed alpha
Helix 58	AG4	F	110	113	Right-handed 310
Helix 59	AG5	F	133	149	Right-handed alpha
Helix 60	AG6	F	165	171	Right-handed alpha
Helix 61	AG7	F	193	205	Right-handed alpha
Helix 62	AG8	F	211	214	Right-handed 310
Helix 63	AG9	G	16	21	Right-handed 310
Helix 64	AH1	G	22	38	Right-handed alpha
Helix 65	AH2	G	45	49	Right-handed 310
Helix 66	AH3	G	50	55	Right-handed 310
Helix 67	AH4	G	86	101	Right-handed alpha
Helix 68	AH5	G	110	113	Right-handed 310
Helix 69	AH6	G	133	149	Right-handed alpha
Helix 70	AH7	G	165	171	Right-handed alpha
Helix 71	AH8	G	193	205	Right-handed alpha
Helix 72	AH9	G	211	214	Right-handed 310
Helix 73	AI1	H	16	18	Right-handed 310
Helix 74	AI2	H	19	38	Right-handed alpha
Helix 75	AI3	H	45	49	Right-handed 310
Helix 76	AI4	H	50	55	Right-handed 310
Helix 77	AI5	H	86	101	Right-handed alpha
Helix 78	AI6	H	110	113	Right-handed 310
Helix 79	AI7	H	133	150	Right-handed alpha
Helix 80	AI8	H	164	169	Right-handed alpha
Helix 81	AI9	H	190	205	Right-handed alpha
Helix 82	AJ1	H	211	214	Right-handed 310

There are 32 sheets in PDB entry 5JX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	12	15	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	125	126	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	62	66	parallel
Strand 3	A	154	158	parallel
Strand 4	A	175	179	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	216	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	12	15	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	125	126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	62	66	parallel
Strand 3	B	154	158	parallel
Strand 4	B	175	179	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	216	217	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	5	first strand
Strand 2	C	12	16	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	125	126	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	62	66	parallel
Strand 3	C	154	158	parallel
Strand 4	C	175	179	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	216	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	5	first strand
Strand 2	D	12	16	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	125	126	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	62	66	parallel
Strand 3	D	154	158	parallel
Strand 4	D	175	179	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	216	217	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	12	15	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	125	126	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	62	66	parallel
Strand 3	E	154	158	parallel
Strand 4	E	175	179	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	108	first strand
Strand 2	E	216	217	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	12	15	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	125	126	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	62	66	parallel
Strand 3	F	154	158	parallel
Strand 4	F	175	179	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	108	first strand
Strand 2	F	216	217	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	12	15	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	G	125	126	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	120	first strand
Strand 2	G	62	66	parallel
Strand 3	G	154	158	parallel
Strand 4	G	175	179	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	108	first strand
Strand 2	G	216	217	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	12	15	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	125	126	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	120	first strand
Strand 2	H	62	66	parallel
Strand 3	H	154	158	parallel
Strand 4	H	175	179	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	108	first strand
Strand 2	H	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JX3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JX3